Resource
| Id | Histone_ChIP-seq/ENCSR770WSE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR770WSE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN901LFV|/analyses/ENCAN901LFV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF114URN|/files/ENCFF114URN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF114URN|/files/ENCFF114URN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.85. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR770WSE | float |
Histone_ChIP-seq_ENCSR770WSE |
Histone_ChIP-seq ENCSR770WSE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27me3"]
|
 |
[1.36, 10.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1581028 | 0.05% | 3408 |
| chr1 | 126354 | 0.05% | 282 |
| chr1_KI270709v1_random | 499 | 0.75% | 2 |
| chr1_KI270712v1_random | 1000 | 0.57% | 3 |
| chr2 | 120483 | 0.05% | 245 |
| chr3 | 44640 | 0.02% | 103 |
| chr4 | 56341 | 0.03% | 124 |
| chr4_GL000008v2_random | 2299 | 1.10% | 2 |
| chr5 | 68538 | 0.04% | 152 |
| chr6 | 51959 | 0.03% | 123 |
| chr7 | 80217 | 0.05% | 175 |
| chr8 | 63566 | 0.04% | 137 |
| chr9 | 84221 | 0.06% | 168 |
| chr10 | 72130 | 0.05% | 161 |
| chr11 | 65252 | 0.05% | 145 |
| chr12 | 50401 | 0.04% | 122 |
| chr13 | 38916 | 0.03% | 80 |
| chr14 | 43005 | 0.04% | 97 |
| chr14_GL000225v1_random | 1095 | 0.52% | 3 |
| chr15 | 48872 | 0.05% | 97 |
| chr16 | 72116 | 0.08% | 151 |
| chr16_KI270728v1_random | 338 | 0.02% | 1 |
| chr17 | 122219 | 0.15% | 244 |
| chr17_GL000205v2_random | 1125 | 0.61% | 3 |
| chr18 | 20742 | 0.03% | 45 |
| chr19 | 176783 | 0.30% | 349 |
| chr20 | 72272 | 0.11% | 160 |
| chr21 | 18499 | 0.04% | 47 |
| chr22 | 42009 | 0.08% | 91 |
| chr22_KI270732v1_random | 596 | 1.43% | 1 |
| chrUn_GL000219v1 | 244 | 0.14% | 1 |
| chrUn_KI270442v1 | 1180 | 0.30% | 3 |
| chrUn_KI270744v1 | 928 | 0.55% | 3 |
| chrUn_KI270754v1 | 337 | 0.84% | 1 |
| chrX | 29996 | 0.02% | 82 |
| chrY | 1856 | <0.01% | 5 |
| 3331 contigs with no values (125533485 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 3408 | 210 | 2634 | 463.92 | 390 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF191KLY.bed.gz | 59.38 KB | e3d35f8d76d28de64b061b395d7f8d5a |
| ENCFF191KLY.tabix.bed.gz | 33.79 KB | d093909f921adfea618d8ea9d9ada14f |
| ENCFF191KLY.tabix.bed.gz.tbi | 27.33 KB | f126512aa28953b60450d39328cf9876 |
| genomic_resource.yaml | 2.78 KB | 33608914a1ab34a559145352f557d0b0 |
| statistics/ |