Resource
| Id | Histone_ChIP-seq/ENCSR768DMK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR768DMK [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN778AOG|/analyses/ENCAN778AOG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF688BUW|/files/ENCFF688BUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF688BUW|/files/ENCFF688BUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.62. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR768DMK | float |
Histone_ChIP-seq_ENCSR768DMK |
Histone_ChIP-seq ENCSR768DMK [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K9ac"]
|
 |
[1.86, 49.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39580467 | 1.23% | 67596 |
| chr1 | 4129941 | 1.66% | 6870 |
| chr1_KI270713v1_random | 712 | 1.75% | 3 |
| chr2 | 2746737 | 1.13% | 4587 |
| chr3 | 2207445 | 1.11% | 3668 |
| chr4 | 1350621 | 0.71% | 2355 |
| chr5 | 1770486 | 0.98% | 2969 |
| chr6 | 1986844 | 1.16% | 3348 |
| chr7 | 1675510 | 1.05% | 3040 |
| chr8 | 1398008 | 0.96% | 2422 |
| chr9 | 1881179 | 1.36% | 3182 |
| chr10 | 1862792 | 1.39% | 3237 |
| chr11 | 2475511 | 1.83% | 4115 |
| chr12 | 1971693 | 1.48% | 3309 |
| chr13 | 759431 | 0.66% | 1297 |
| chr14 | 1365549 | 1.28% | 2270 |
| chr15 | 1275296 | 1.25% | 2187 |
| chr16 | 1642755 | 1.82% | 2886 |
| chr17 | 2575623 | 3.09% | 4469 |
| chr18 | 655788 | 0.82% | 1169 |
| chr19 | 2460904 | 4.20% | 4178 |
| chr20 | 1151540 | 1.79% | 2028 |
| chr21 | 377825 | 0.81% | 669 |
| chr22 | 1154615 | 2.27% | 1988 |
| chrUn_GL000219v1 | 409 | 0.23% | 1 |
| chrX | 703253 | 0.45% | 1349 |
| 3341 contigs with no values (186084557 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67596 | 160 | 6927 | 585.54 | 428 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF488QII.bed.gz | 1.4 MB | 5be5604715ef382913ba9619439c5b1a |
| ENCFF488QII.tabix.bed.gz | 681.98 KB | 3f1da6f44df1eded72579eec23e8b343 |
| ENCFF488QII.tabix.bed.gz.tbi | 218.25 KB | d7d09327c7a49a9069c0da7c43d3708f |
| genomic_resource.yaml | 2.78 KB | 07ea3dbf343f052b0f5f7aed6b648613 |
| statistics/ |