Resource
| Id | Histone_ChIP-seq/ENCSR767HHW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR767HHW [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN201XKG|/analyses/ENCAN201XKG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF051VZX|/files/ENCFF051VZX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF051VZX|/files/ENCFF051VZX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.49. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR767HHW | float |
Histone_ChIP-seq_ENCSR767HHW |
Histone_ChIP-seq ENCSR767HHW [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K36me3"]
|
 |
[1.67, 7.99] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34928976 | 1.09% | 51657 |
| chr1 | 3811804 | 1.53% | 5445 |
| chr2 | 2542469 | 1.05% | 3934 |
| chr3 | 2061003 | 1.04% | 3196 |
| chr4 | 1086037 | 0.57% | 1850 |
| chr5 | 1570850 | 0.87% | 2459 |
| chr6 | 1505462 | 0.88% | 2365 |
| chr7 | 1467342 | 0.92% | 2272 |
| chr8 | 1024040 | 0.71% | 1647 |
| chr9 | 1514698 | 1.09% | 2254 |
| chr10 | 1519251 | 1.14% | 2362 |
| chr11 | 1817173 | 1.35% | 2607 |
| chr12 | 2213501 | 1.66% | 3149 |
| chr13 | 627041 | 0.55% | 1015 |
| chr14 | 1273803 | 1.19% | 1891 |
| chr15 | 1301143 | 1.28% | 1991 |
| chr16 | 1726801 | 1.91% | 2419 |
| chr17 | 2280452 | 2.74% | 3191 |
| chr18 | 448977 | 0.56% | 754 |
| chr19 | 2508025 | 4.28% | 3143 |
| chr20 | 1066541 | 1.65% | 1517 |
| chr21 | 389891 | 0.83% | 604 |
| chr22 | 1064085 | 2.09% | 1391 |
| chrX | 102624 | 0.07% | 187 |
| chrY | 5963 | 0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 51657 | 220 | 9053 | 676.17 | 527 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF264PEI.bed.gz | 1.0 MB | 21dfbc554057f3e387f2e104cfa7f62f |
| ENCFF264PEI.tabix.bed.gz | 524.02 KB | 375464efeab118b8cb59cf03d6428858 |
| ENCFF264PEI.tabix.bed.gz.tbi | 126.97 KB | f3964b41cf903e393cdd5782bd633d1f |
| genomic_resource.yaml | 2.79 KB | 1761596047a3438ca9eaceab16da935a |
| statistics/ |