Resource
| Id | Histone_ChIP-seq/ENCSR765SCM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR765SCM [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (15 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN497LSC|/analyses/ENCAN497LSC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF631ZLW|/files/ENCFF631ZLW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24085124 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR765SCM | float |
Histone_ChIP-seq_ENCSR765SCM |
Histone_ChIP-seq ENCSR765SCM [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K36me3"]
|
 |
[1.41, 21.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 135426139 | 4.21% | 215282 |
| chr1 | 13483514 | 5.42% | 20975 |
| chr1_KI270711v1_random | 1515 | 3.59% | 4 |
| chr2 | 10760306 | 4.44% | 18676 |
| chr3 | 8471650 | 4.27% | 14471 |
| chr4 | 6004841 | 3.16% | 10913 |
| chr5 | 7204689 | 3.97% | 12250 |
| chr6 | 5855617 | 3.43% | 10394 |
| chr7 | 6566997 | 4.12% | 10759 |
| chr8 | 5072683 | 3.50% | 8927 |
| chr9 | 5892116 | 4.26% | 9018 |
| chr10 | 5627440 | 4.21% | 9486 |
| chr11 | 7004952 | 5.19% | 10755 |
| chr12 | 7235029 | 5.43% | 11188 |
| chr13 | 3015819 | 2.64% | 5645 |
| chr14 | 4865822 | 4.55% | 8131 |
| chr15 | 5071308 | 4.97% | 8187 |
| chr16 | 5314103 | 5.88% | 6884 |
| chr17 | 7178365 | 8.62% | 9931 |
| chr17_GL000205v2_random | 1412 | 0.76% | 1 |
| chr17_KI270729v1_random | 1388 | 0.49% | 3 |
| chr18 | 2528728 | 3.15% | 4599 |
| chr19 | 8445870 | 14.41% | 8942 |
| chr20 | 3626841 | 5.63% | 5192 |
| chr21 | 1405082 | 3.01% | 2234 |
| chr22 | 3043872 | 5.99% | 3754 |
| chrUn_GL000195v1 | 3672 | 2.01% | 10 |
| chrUn_GL000216v2 | 801 | 0.45% | 2 |
| chrUn_GL000219v1 | 4501 | 2.51% | 16 |
| chrUn_KI270438v1 | 1168 | 1.04% | 4 |
| chrUn_KI270466v1 | 503 | 40.79% | 2 |
| chrUn_KI270467v1 | 1549 | 39.52% | 1 |
| chrUn_KI270587v1 | 783 | 26.37% | 3 |
| chrUn_KI270757v1 | 473 | 0.66% | 2 |
| chrX | 1732730 | 1.11% | 3923 |
| 3332 contigs with no values (185065280 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 215282 | 140 | 20982 | 629.06 | 412 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF686CGJ.bed.gz | 4.24 MB | 75539e49d80fc614eb6a2b30d4803977 |
| ENCFF686CGJ.tabix.bed.gz | 2.03 MB | dd97cb589923d3db7dcf3442d290000a |
| ENCFF686CGJ.tabix.bed.gz.tbi | 220.7 KB | ce5ab980d74930031f002cfcdc70a91a |
| genomic_resource.yaml | 2.07 KB | fba4e102d76c3bfbf5f717f5aa1d30c8 |
| statistics/ |