Resource

Id Histone_ChIP-seq/ENCSR764XULcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR764XUL [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR764XUL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001407/
  • biosample_summary: Homo sapiens germinal matrix tissue male embryo (20 weeks)
  • date_created: 2015-09-15T20:27:11.775467+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR764XUL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR764XUL float

Histone_ChIP-seq_ENCSR764XUL
Histone_ChIP-seq ENCSR764XUL [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR764XUL [1.71, 49.7]
n
74,984,346
mean
5.13
sd
1.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 749843462.33% 95738
chr1 7067336 2.84% 8882
chr1_KI270713v1_random 953 2.34% 3
chr2 6441865 2.66% 8110
chr3 4834130 2.44% 6117
chr4 3218600 1.69% 4344
chr5 4063593 2.24% 5178
chr6 4375194 2.56% 5608
chr7 3896760 2.45% 5046
chr8 3365090 2.32% 4371
chr9 3435062 2.48% 4280
chr10 3542772 2.65% 4601
chr11 4334722 3.21% 5294
chr12 3823915 2.87% 4839
chr13 2046963 1.79% 2621
chr14 2814200 2.63% 3465
chr15 2501072 2.45% 3138
chr16 2735807 3.03% 3446
chr17 3429476 4.12% 4216
chr18 1962449 2.44% 2511
chr19 2291729 3.91% 3057
chr20 2033916 3.16% 2606
chr21 698705 1.50% 931
chr22 1483893 2.92% 1877
chr22_KI270733v1_random 690 0.38% 2
chrUn_GL000195v1 1283 0.70% 2
chrUn_GL000219v1 703 0.39% 2
chrX 578383 0.37% 1178
chrY 5085 0.01% 13
3338 contigs with no values (128494474 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95738 190 9486 783.22 626
global segment-length histogram

Files

Filename Size md5
ENCFF555DTH.bed.gz 1.71 MB 0198e37d0189177d22498dbf3c908975
ENCFF555DTH.tabix.bed.gz 915.34 KB f0485b5c43b8f7893838825a08dd1417
ENCFF555DTH.tabix.bed.gz.tbi 344.78 KB 2afc720081fe570bbf8836ab878c8eb0
genomic_resource.yaml 2.0 KB cce7db999071891cd3f347896c4e96e5
statistics/