Resource

Id Histone_ChIP-seq/ENCSR761WVQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR761WVQ [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR761WVQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (53 years)
  • date_created: 2016-10-19T23:19:20.113602+00:00
  • date_released: 2016-11-07
  • doi: 10.17989/ENCSR761WVQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR761WVQ float

Histone_ChIP-seq_ENCSR761WVQ
Histone_ChIP-seq ENCSR761WVQ [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR761WVQ [2.2, 44]
n
32,970,976
mean
17.4
sd
7.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 329709761.02% 21288
chr1 3278085 1.32% 2133
chr2 2241420 0.93% 1386
chr3 1852728 0.93% 1164
chr4 1303614 0.69% 805
chr5 1500133 0.83% 920
chr6 1910443 1.12% 1198
chr7 1579855 0.99% 1061
chr8 1255092 0.86% 793
chr9 1397824 1.01% 924
chr10 1400577 1.05% 891
chr11 1817577 1.35% 1130
chr12 1758942 1.32% 1085
chr13 660031 0.58% 416
chr14 1105903 1.03% 680
chr15 1081228 1.06% 711
chr16 1309400 1.45% 858
chr17 1964971 2.36% 1257
chr18 543667 0.68% 351
chr19 2151283 3.67% 1533
chr20 848171 1.32% 562
chr21 307234 0.66% 204
chr22 747134 1.47% 505
chrX 955664 0.61% 721
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21288 235 19960 1548.81 1409
global segment-length histogram

Files

Filename Size md5
ENCFF734KNR.bed.gz 562.93 KB 18775b27e29d99f16262b81c0459dc6e
ENCFF734KNR.tabix.bed.gz 247.04 KB 847f11b333454a5838186c8f45436585
ENCFF734KNR.tabix.bed.gz.tbi 138.48 KB 9dbc5e8279a485a84520fa84f483b39d
genomic_resource.yaml 1.73 KB afeb6e0d0f5fe6678aefc54f8f361384
statistics/