Resource
| Id | Histone_ChIP-seq/ENCSR760LFY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR760LFY [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN901MYB|/analyses/ENCAN901MYB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF964UUN|/files/ENCFF964UUN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22040015 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR760LFY | float |
Histone_ChIP-seq_ENCSR760LFY |
Histone_ChIP-seq ENCSR760LFY [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K36me3"]
|
 |
[1.72, 27.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 128228766 | 3.99% | 149410 |
| chr1 | 12390963 | 4.98% | 14504 |
| chr2 | 9391835 | 3.88% | 12160 |
| chr3 | 7719137 | 3.89% | 9400 |
| chr4 | 4027062 | 2.12% | 5621 |
| chr5 | 5793656 | 3.19% | 7558 |
| chr6 | 5265966 | 3.08% | 6707 |
| chr7 | 5776733 | 3.63% | 6989 |
| chr8 | 4056119 | 2.79% | 5357 |
| chr9 | 5833218 | 4.21% | 6366 |
| chr10 | 5539062 | 4.14% | 6931 |
| chr11 | 6989490 | 5.17% | 7434 |
| chr12 | 6963159 | 5.22% | 7790 |
| chr13 | 2424857 | 2.12% | 3366 |
| chr14 | 4320563 | 4.04% | 5278 |
| chr15 | 4489212 | 4.40% | 5526 |
| chr16 | 6486089 | 7.18% | 6311 |
| chr17 | 8069856 | 9.69% | 8339 |
| chr18 | 1974215 | 2.46% | 2773 |
| chr19 | 8146024 | 13.90% | 7544 |
| chr20 | 4373394 | 6.79% | 4436 |
| chr21 | 1565490 | 3.35% | 1707 |
| chr22 | 4219721 | 8.30% | 3799 |
| chrX | 2319500 | 1.49% | 3357 |
| chrY | 93445 | 0.16% | 157 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 149410 | 175 | 37561 | 858.23 | 562 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF185XYP.bed.gz | 2.93 MB | d7f4cea216d230e898adb32e77af13b7 |
| ENCFF185XYP.tabix.bed.gz | 1.42 MB | 5a167fc2c764b2492e3c3f0f79c14477 |
| ENCFF185XYP.tabix.bed.gz.tbi | 182.88 KB | 607de59617670f8174d916fab1025719 |
| genomic_resource.yaml | 1.99 KB | f209dd629bed30ac7e9121b507971ab8 |
| statistics/ |