Resource

Id Histone_ChIP-seq/ENCSR748RBTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR748RBT [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR748RBT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002367/
  • biosample_summary: Homo sapiens prostate gland tissue male adult (54 years)
  • date_created: 2017-07-28T10:04:13.826292+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR748RBT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR748RBT float

Histone_ChIP-seq_ENCSR748RBT
Histone_ChIP-seq ENCSR748RBT [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR748RBT [1.16, 46.9]
n
31,840,879
mean
19.8
sd
9.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 318408790.99% 20162
chr1 3119382 1.25% 1992
chr2 2169819 0.90% 1324
chr3 1791087 0.90% 1102
chr4 1277868 0.67% 754
chr5 1516260 0.84% 894
chr6 1847387 1.08% 1122
chr7 1567114 0.98% 989
chr8 1170015 0.81% 744
chr9 1310352 0.95% 843
chr10 1317308 0.98% 813
chr11 1715887 1.27% 1080
chr12 1661276 1.25% 1019
chr13 652071 0.57% 406
chr14 1064926 0.99% 654
chr15 1039672 1.02% 658
chr16 1258439 1.39% 818
chr17 1881524 2.26% 1230
chr18 551613 0.69% 341
chr19 2092275 3.57% 1476
chr20 801220 1.24% 532
chr21 344553 0.74% 214
chr22 738467 1.45% 489
chrX 914373 0.59% 647
chrY 37991 0.07% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20162 225 20337 1579.25 1458
global segment-length histogram

Files

Filename Size md5
ENCFF886EWJ.bed.gz 565.6 KB c7bad103395fff3b47dad93291da7fc4
ENCFF886EWJ.tabix.bed.gz 237.71 KB 1f9ee79a21a159bb85908abe73fab84e
ENCFF886EWJ.tabix.bed.gz.tbi 140.09 KB 20f0678567b4e1f7b0a19fb109124099
genomic_resource.yaml 1.5 KB a7cdb84c3eef7c2e779cece0a0eb0c6b
statistics/