Resource
| Id | Histone_ChIP-seq/ENCSR748OJA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR748OJA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022VSN|/analyses/ENCAN022VSN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF381UDR|/files/ENCFF381UDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF381UDR|/files/ENCFF381UDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR748OJA | float |
Histone_ChIP-seq_ENCSR748OJA |
Histone_ChIP-seq ENCSR748OJA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K27ac"]
|
 |
[1.68, 78.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 115021407 | 3.58% | 73563 |
| chr1 | 11315623 | 4.55% | 6976 |
| chr2 | 8801565 | 3.63% | 5811 |
| chr3 | 7871803 | 3.97% | 4867 |
| chr4 | 5069010 | 2.66% | 3317 |
| chr5 | 6359855 | 3.50% | 4033 |
| chr6 | 6372009 | 3.73% | 4258 |
| chr7 | 5102536 | 3.20% | 3417 |
| chr8 | 4906701 | 3.38% | 3323 |
| chr9 | 4873271 | 3.52% | 3181 |
| chr10 | 6405967 | 4.79% | 3903 |
| chr11 | 5796072 | 4.29% | 3755 |
| chr12 | 6055442 | 4.54% | 3682 |
| chr13 | 2850843 | 2.49% | 1914 |
| chr14 | 3616516 | 3.38% | 2298 |
| chr15 | 4132702 | 4.05% | 2584 |
| chr16 | 3670916 | 4.06% | 2457 |
| chr17 | 5764984 | 6.92% | 3424 |
| chr18 | 2508026 | 3.12% | 1638 |
| chr19 | 4194572 | 7.16% | 2575 |
| chr20 | 3039072 | 4.72% | 1938 |
| chr21 | 1162680 | 2.49% | 832 |
| chr22 | 2618625 | 5.15% | 1554 |
| chrX | 2453771 | 1.57% | 1773 |
| chrY | 78846 | 0.14% | 53 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73563 | 225 | 47862 | 1563.58 | 1095 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF616PCH.bed.gz | 1.86 MB | 46fb2d0b939ec968d57ac34a3f4a8295 |
| ENCFF616PCH.tabix.bed.gz | 819.88 KB | 0e3cffc120e3ae1cf9899cc0629e334b |
| ENCFF616PCH.tabix.bed.gz.tbi | 255.55 KB | 7b8f785e6491d869729ea40839b9866b |
| genomic_resource.yaml | 2.79 KB | 543f9879c4aad9dd893e233761da0721 |
| statistics/ |