Resource

Id Histone_ChIP-seq/ENCSR746ZXPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR746ZXP [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR746ZXP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue male embryo (38 weeks)
  • date_created: 2017-03-22T16:16:46.232924+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR746ZXP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (38 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR746ZXP float

Histone_ChIP-seq_ENCSR746ZXP
Histone_ChIP-seq ENCSR746ZXP [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR746ZXP [1.34, 11.7]
n
23,489,323
mean
4.53
sd
1.19

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 234893230.73% 54847
chr1 2299522 0.92% 5469
chr2 1384895 0.57% 3397
chr3 576883 0.29% 1629
chr4 983296 0.52% 2055
chr5 1102490 0.61% 2604
chr6 820056 0.48% 2046
chr7 1273494 0.80% 2875
chr8 839703 0.58% 2132
chr9 1204325 0.87% 2641
chr9_KI270718v1_random 327 0.86% 1
chr10 1263242 0.94% 3044
chr11 1415498 1.05% 3283
chr12 1050607 0.79% 2417
chr13 472576 0.41% 1124
chr14 664863 0.62% 1595
chr15 520993 0.51% 1375
chr16 1225550 1.36% 2674
chr17 1501765 1.80% 3397
chr17_GL000205v2_random 871 0.47% 3
chr18 353087 0.44% 974
chr19 1725087 2.94% 3756
chr20 1374255 2.13% 3049
chr21 421661 0.90% 969
chr22 933593 1.84% 2111
chr22_KI270732v1_random 264 0.64% 1
chr22_KI270733v1_random 421 0.23% 2
chr22_KI270735v1_random 286 0.67% 1
chr22_KI270738v1_random 702 0.71% 1
chrUn_GL000219v1 4498 2.51% 9
chrUn_KI270438v1 400 0.36% 1
chrUn_KI270442v1 432 0.11% 1
chrUn_KI270744v1 2725 1.62% 3
chrUn_KI270751v1 142 0.09% 1
chrX 70640 0.05% 206
chrY 174 <0.01% 1
3331 contigs with no values (127486961 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54847 135 5254 428.27 335
global segment-length histogram

Files

Filename Size md5
ENCFF439VPD.bed.gz 1005.08 KB 13fef041a78f81a4f384f7ccedaddfea
ENCFF439VPD.tabix.bed.gz 522.76 KB 9aea51215e465c613bacf3c4175891f0
ENCFF439VPD.tabix.bed.gz.tbi 141.67 KB 5f48964f4c409d090850cd14c3c510d8
genomic_resource.yaml 2.01 KB c90c79cb456eb4373ab9f6bdac01614f
statistics/