Resource
| Id | Histone_ChIP-seq/ENCSR743GCE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR743GCE [biosample_summary="Homo sapiens uterus tissue female adult (51 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN876QIW|/analyses/ENCAN876QIW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF991UKU|/files/ENCFF991UKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF991UKU|/files/ENCFF991UKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.41. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR743GCE | float |
Histone_ChIP-seq_ENCSR743GCE |
Histone_ChIP-seq ENCSR743GCE [biosample_summary="Homo sapiens uterus tissue female adult (51 years)" and target="H3K4me3"]
|
 |
[1.19, 27.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31419622 | 0.98% | 20041 |
| chr1 | 3075578 | 1.24% | 1971 |
| chr2 | 2176328 | 0.90% | 1368 |
| chr3 | 1837056 | 0.93% | 1137 |
| chr4 | 1278422 | 0.67% | 782 |
| chr5 | 1424825 | 0.78% | 849 |
| chr6 | 1824368 | 1.07% | 1133 |
| chr7 | 1532971 | 0.96% | 969 |
| chr8 | 1111577 | 0.77% | 713 |
| chr9 | 1308480 | 0.95% | 848 |
| chr10 | 1345455 | 1.01% | 840 |
| chr11 | 1742904 | 1.29% | 1059 |
| chr12 | 1703437 | 1.28% | 1042 |
| chr13 | 622752 | 0.54% | 392 |
| chr14 | 1032319 | 0.96% | 651 |
| chr15 | 1037977 | 1.02% | 653 |
| chr16 | 1191010 | 1.32% | 809 |
| chr17 | 1804790 | 2.17% | 1185 |
| chr17_GL000205v2_random | 1583 | 0.85% | 2 |
| chr18 | 528550 | 0.66% | 341 |
| chr19 | 2024717 | 3.45% | 1391 |
| chr20 | 782357 | 1.21% | 516 |
| chr21 | 310828 | 0.67% | 198 |
| chr22 | 709643 | 1.40% | 473 |
| chrUn_GL000219v1 | 1596 | 0.89% | 1 |
| chrUn_KI270467v1 | 653 | 16.66% | 1 |
| chrX | 1009446 | 0.65% | 717 |
| 3340 contigs with no values (185935791 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 20041 | 247 | 18151 | 1567.77 | 1426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF141BCE.bed.gz | 568.35 KB | 29f9b357d48de864e7c4ebcffe546e84 |
| ENCFF141BCE.tabix.bed.gz | 237.02 KB | 06fc6678c96ad92ebdd6172890b5f0e4 |
| ENCFF141BCE.tabix.bed.gz.tbi | 136.59 KB | 15cf564ea20204d4ce272a0fbc1b1108 |
| genomic_resource.yaml | 2.74 KB | ad2f6ca1f208f6d11f9cca6223a78f34 |
| statistics/ |