Resource
| Id | Histone_ChIP-seq/ENCSR743DDX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR743DDX [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN988DEF|/analyses/ENCAN988DEF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF081CDJ|/files/ENCFF081CDJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF081CDJ|/files/ENCFF081CDJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR743DDX | float |
Histone_ChIP-seq_ENCSR743DDX |
Histone_ChIP-seq ENCSR743DDX [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K27ac"]
|
 |
[1.81, 118] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 84484876 | 2.63% | 87135 |
| chr1 | 8603888 | 3.46% | 8448 |
| chr1_KI270713v1_random | 622 | 1.53% | 1 |
| chr2 | 6281202 | 2.59% | 6883 |
| chr3 | 4720903 | 2.38% | 5086 |
| chr4 | 2825161 | 1.49% | 3370 |
| chr5 | 3787627 | 2.09% | 4162 |
| chr6 | 4353013 | 2.55% | 4801 |
| chr7 | 3662597 | 2.30% | 4004 |
| chr8 | 3108434 | 2.14% | 3590 |
| chr9 | 4132581 | 2.99% | 4250 |
| chr10 | 4366678 | 3.26% | 4630 |
| chr11 | 4963319 | 3.67% | 4706 |
| chr12 | 3978955 | 2.99% | 4037 |
| chr13 | 1603843 | 1.40% | 1967 |
| chr14 | 3006128 | 2.81% | 2931 |
| chr15 | 2908103 | 2.85% | 3032 |
| chr16 | 3467082 | 3.84% | 3356 |
| chr17 | 5332004 | 6.40% | 4685 |
| chr17_GL000205v2_random | 563 | 0.30% | 1 |
| chr18 | 1515011 | 1.88% | 1774 |
| chr19 | 4206693 | 7.18% | 3518 |
| chr20 | 2492648 | 3.87% | 2556 |
| chr21 | 1053953 | 2.26% | 1241 |
| chr22 | 2317960 | 4.56% | 2120 |
| chr22_KI270733v1_random | 350 | 0.19% | 1 |
| chrUn_GL000195v1 | 1303 | 0.71% | 3 |
| chrUn_GL000219v1 | 1019 | 0.57% | 2 |
| chrX | 1793236 | 1.15% | 1980 |
| 3338 contigs with no values (185536298 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 87135 | 180 | 25108 | 969.59 | 667 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF878SVN.bed.gz | 2.04 MB | 6160937174c25761149ad03ec74dc09e |
| ENCFF878SVN.tabix.bed.gz | 932.53 KB | 55b4f3246f40a9b14de4451bd7298539 |
| ENCFF878SVN.tabix.bed.gz.tbi | 269.68 KB | 12ffcd12b9794bdc30fc3cb60e11a348 |
| genomic_resource.yaml | 2.75 KB | 5e65fedfdaa41a3faa07269e5253aebe |
| statistics/ |