Resource
| Id | Histone_ChIP-seq/ENCSR741HEF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR741HEF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN403ZLO|/analyses/ENCAN403ZLO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF105YBO|/files/ENCFF105YBO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF105YBO|/files/ENCFF105YBO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.49. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR741HEF | float |
Histone_ChIP-seq_ENCSR741HEF |
Histone_ChIP-seq ENCSR741HEF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K27ac"]
|
 |
[1.65, 35.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38989561 | 1.21% | 35993 |
| chr1 | 4008290 | 1.61% | 3607 |
| chr2 | 2770200 | 1.14% | 2619 |
| chr3 | 2655784 | 1.34% | 2445 |
| chr4 | 1543838 | 0.81% | 1454 |
| chr5 | 2023518 | 1.11% | 1886 |
| chr6 | 2061638 | 1.21% | 1932 |
| chr7 | 1709539 | 1.07% | 1647 |
| chr8 | 1577354 | 1.09% | 1514 |
| chr9 | 1701241 | 1.23% | 1602 |
| chr10 | 2109527 | 1.58% | 1870 |
| chr11 | 1941136 | 1.44% | 1761 |
| chr12 | 2141742 | 1.61% | 1890 |
| chr13 | 902945 | 0.79% | 902 |
| chr14 | 1194755 | 1.12% | 1111 |
| chr15 | 1393755 | 1.37% | 1284 |
| chr16 | 1356722 | 1.50% | 1278 |
| chr17 | 2119550 | 2.55% | 1901 |
| chr18 | 807965 | 1.01% | 757 |
| chr19 | 1751317 | 2.99% | 1591 |
| chr20 | 1135704 | 1.76% | 988 |
| chr21 | 360294 | 0.77% | 354 |
| chr22 | 1036493 | 2.04% | 900 |
| chrX | 665477 | 0.43% | 684 |
| chrY | 20777 | 0.04% | 16 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 35993 | 215 | 19399 | 1083.25 | 810 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF329CDU.bed.gz | 897.57 KB | 89bac7911b697ba063a5897c1aae88c6 |
| ENCFF329CDU.tabix.bed.gz | 396.35 KB | d211bad08bda52378f7a744222a4cc7a |
| ENCFF329CDU.tabix.bed.gz.tbi | 165.4 KB | abfd6d04c8a6bd9521210bd61a9b1aab |
| genomic_resource.yaml | 2.79 KB | a5e27b598821e9f3950a0acbe04a1e42 |
| statistics/ |