Resource

Id Histone_ChIP-seq/ENCSR740FYNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR740FYN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR740FYN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007950/
  • biosample_summary: Homo sapiens GM23338 originated from GM23248
  • date_created: 2015-08-27T17:07:45.146877+00:00
  • date_released: 2017-01-13
  • doi: 10.17989/ENCSR740FYN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR740FYN float

Histone_ChIP-seq_ENCSR740FYN
Histone_ChIP-seq ENCSR740FYN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR740FYN [1.22, 34.8]
n
119,674,361
mean
8.27
sd
5.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1196743613.72% 107466
chr1 11289828 4.53% 9748
chr1_KI270713v1_random 4366 10.72% 5
chr1_KI270714v1_random 949 2.27% 3
chr2 9088796 3.75% 8319
chr3 7732735 3.90% 7078
chr4 6033571 3.17% 5762
chr5 6722233 3.70% 6062
chr6 7608137 4.45% 6636
chr7 6270242 3.93% 5783
chr8 5174192 3.56% 4784
chr9 4970371 3.59% 4536
chr10 5297964 3.96% 4792
chr11 6230035 4.61% 5444
chr12 5973469 4.48% 5281
chr13 3099406 2.71% 2915
chr14 3809854 3.56% 3402
chr15 3884977 3.81% 3441
chr16 3781748 4.19% 3388
chr17 5275991 6.34% 4315
chr17_GL000205v2_random 4570 2.46% 5
chr18 2625420 3.27% 2481
chr19 4793738 8.18% 3972
chr20 3023734 4.69% 2635
chr21 1126906 2.41% 1036
chr22 2096641 4.13% 1910
chr22_KI270733v1_random 6107 3.40% 11
chrUn_GL000195v1 2819 1.54% 6
chrUn_GL000219v1 2662 1.49% 3
chrUn_GL000220v1 1018 0.63% 3
chrX 3572098 2.29% 3528
chrY 169784 0.30% 182
3335 contigs with no values (128105364 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107466 200 25250 1113.6 792
global segment-length histogram

Files

Filename Size md5
ENCFF658GSF.bed.gz 2.62 MB 99ff8c0a49112d9f8ef0c8e10d04543c
ENCFF658GSF.tabix.bed.gz 1.14 MB 35e6f80e4b8e9e8b1a4201c785ed9044
ENCFF658GSF.tabix.bed.gz.tbi 380.44 KB 45f4aad634f74e60b5b2696b74df78d7
genomic_resource.yaml 1.44 KB 2c96d08816513532dfce1461733c3db8
statistics/