Resource
| Id | Histone_ChIP-seq/ENCSR738LBP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR738LBP [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN941QMN|/analyses/ENCAN941QMN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN941QMN|/analyses/ENCAN941QMN/} has in progress subobject document {2b587c99-9b87-400a-9219-c972b1a6b6a3|/documents/2b587c99-9b87-400a-9219-c972b1a6b6a3/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF950QAA|/files/ENCFF950QAA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR738LBP | float |
Histone_ChIP-seq_ENCSR738LBP |
Histone_ChIP-seq ENCSR738LBP [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K4me3"]
|
 |
[2.02, 71] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34487170 | 1.07% | 25774 |
| chr1 | 3492732 | 1.40% | 2606 |
| chr2 | 2398831 | 0.99% | 1809 |
| chr3 | 1922650 | 0.97% | 1434 |
| chr4 | 1312024 | 0.69% | 938 |
| chr5 | 1587196 | 0.87% | 1144 |
| chr6 | 2015019 | 1.18% | 1481 |
| chr7 | 1645860 | 1.03% | 1289 |
| chr8 | 1174603 | 0.81% | 867 |
| chr9 | 1348960 | 0.97% | 1045 |
| chr10 | 1467477 | 1.10% | 1149 |
| chr11 | 1793959 | 1.33% | 1280 |
| chr12 | 1825285 | 1.37% | 1321 |
| chr13 | 702055 | 0.61% | 516 |
| chr14 | 1249295 | 1.17% | 925 |
| chr15 | 1148509 | 1.13% | 860 |
| chr16 | 1352858 | 1.50% | 1023 |
| chr17 | 2070593 | 2.49% | 1541 |
| chr18 | 545596 | 0.68% | 395 |
| chr19 | 2198904 | 3.75% | 1682 |
| chr20 | 897291 | 1.39% | 691 |
| chr21 | 363899 | 0.78% | 290 |
| chr22 | 828495 | 1.63% | 607 |
| chrX | 1102002 | 0.71% | 849 |
| chrY | 43077 | 0.08% | 32 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 25774 | 190 | 22792 | 1338.06 | 1127 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF963LSO.bed.gz | 661.03 KB | 55bb58705120920c7abd74c30d426186 |
| ENCFF963LSO.tabix.bed.gz | 295.4 KB | 8023f428385305b3a635aade2ce1d395 |
| ENCFF963LSO.tabix.bed.gz.tbi | 151.82 KB | d8149912603ce1ba4f23fcee171dc006 |
| genomic_resource.yaml | 2.34 KB | f8533247bdaf85f2cd98b0bba793571f |
| statistics/ |