Resource

Id Histone_ChIP-seq/ENCSR735SLWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR735SLW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR735SLW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T04:37:44.622282+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR735SLW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR735SLW float

Histone_ChIP-seq_ENCSR735SLW
Histone_ChIP-seq ENCSR735SLW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR735SLW [1.69, 37.2]
n
48,322,362
mean
9
sd
5.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 483223621.50% 52721
chr1 5058203 2.03% 5411
chr2 3248685 1.34% 3613
chr3 2795436 1.41% 3080
chr4 1804218 0.95% 1970
chr5 2575881 1.42% 2642
chr6 2784180 1.63% 2904
chr7 1995678 1.25% 2179
chr8 2000913 1.38% 2190
chr9 2432935 1.76% 2515
chr10 2763862 2.07% 2792
chr11 2143928 1.59% 2604
chr12 2743021 2.06% 2911
chr13 1032816 0.90% 1182
chr14 1783985 1.67% 1838
chr15 1158308 1.14% 1453
chr16 1852936 2.05% 2167
chr17 2680686 3.22% 2908
chr18 959981 1.19% 949
chr19 2448762 4.18% 2817
chr20 1348418 2.09% 1405
chr21 413525 0.89% 472
chr22 1281442 2.52% 1414
chrX 973934 0.62% 1254
chrY 40629 0.07% 51
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52721 180 24213 916.57 581
global segment-length histogram

Files

Filename Size md5
ENCFF646VQX.bed.gz 1.22 MB 97fee7694b58783d92f394f2d6fe699d
ENCFF646VQX.tabix.bed.gz 566.73 KB d7c8e8989d56878502185cc08c5171dd
ENCFF646VQX.tabix.bed.gz.tbi 178.95 KB fe278ae314890d8e0ee9131b46b64b47
genomic_resource.yaml 2.04 KB 510037810d553cf80426e2fad4b1a2a9
statistics/