Resource
| Id | Histone_ChIP-seq/ENCSR729AAI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR729AAI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN569BMB|/analyses/ENCAN569BMB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF627IMW|/files/ENCFF627IMW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF627IMW|/files/ENCFF627IMW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR729AAI | float |
Histone_ChIP-seq_ENCSR729AAI |
Histone_ChIP-seq ENCSR729AAI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me3"]
|
 |
[1.88, 84.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49665222 | 1.54% | 28165 |
| chr1 | 4894548 | 1.97% | 2720 |
| chr2 | 3395206 | 1.40% | 1927 |
| chr3 | 2885828 | 1.46% | 1567 |
| chr4 | 2104179 | 1.11% | 1138 |
| chr5 | 2475233 | 1.36% | 1349 |
| chr6 | 2907486 | 1.70% | 1585 |
| chr7 | 2463742 | 1.55% | 1427 |
| chr8 | 1944932 | 1.34% | 1117 |
| chr9 | 2090544 | 1.51% | 1224 |
| chr10 | 2221580 | 1.66% | 1267 |
| chr11 | 2595719 | 1.92% | 1426 |
| chr12 | 2633593 | 1.98% | 1430 |
| chr13 | 1110471 | 0.97% | 650 |
| chr14 | 1548963 | 1.45% | 849 |
| chr15 | 1609242 | 1.58% | 928 |
| chr16 | 1851101 | 2.05% | 1125 |
| chr17 | 2765283 | 3.32% | 1558 |
| chr18 | 909007 | 1.13% | 537 |
| chr19 | 2963888 | 5.06% | 1774 |
| chr20 | 1258509 | 1.95% | 749 |
| chr21 | 473686 | 1.01% | 286 |
| chr22 | 1073464 | 2.11% | 640 |
| chrX | 1434918 | 0.92% | 865 |
| chrY | 54100 | 0.09% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28165 | 240 | 28162 | 1763.37 | 1449 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF020ZIL.bed.gz | 766.21 KB | 57c0d5d2782e62197dd4d0a1d1ea78a1 |
| ENCFF020ZIL.tabix.bed.gz | 328.6 KB | 88d22a03217a03418beb6779e968f23d |
| ENCFF020ZIL.tabix.bed.gz.tbi | 176.16 KB | f0cfcf93f5467b956dc482c6ae700616 |
| genomic_resource.yaml | 2.79 KB | d123e8b3802a33b63094821a080900cc |
| statistics/ |