Resource
| Id | Histone_ChIP-seq/ENCSR728SZE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR728SZE [biosample_summary="Homo sapiens H1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN739JHW|/analyses/ENCAN739JHW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF594HBW|/files/ENCFF594HBW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19040225 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF157VRW|/files/ENCFF157VRW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 23094120 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR728SZE | float |
Histone_ChIP-seq_ENCSR728SZE |
Histone_ChIP-seq ENCSR728SZE [biosample_summary="Homo sapiens H1" and target="H4K20me1"]
|
 |
[1.42, 29.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 29974590 | 0.93% | 103479 |
| chr1 | 2726997 | 1.10% | 9600 |
| chr2 | 2019250 | 0.83% | 7234 |
| chr3 | 1404193 | 0.71% | 5089 |
| chr4 | 1035903 | 0.54% | 3729 |
| chr5 | 1362287 | 0.75% | 4729 |
| chr6 | 1274098 | 0.75% | 4533 |
| chr7 | 1545032 | 0.97% | 5444 |
| chr8 | 1231776 | 0.85% | 4188 |
| chr9 | 1366918 | 0.99% | 4712 |
| chr10 | 1318738 | 0.99% | 4538 |
| chr11 | 1501758 | 1.11% | 5187 |
| chr12 | 1380326 | 1.04% | 4903 |
| chr13 | 559111 | 0.49% | 1993 |
| chr14 | 861796 | 0.81% | 3067 |
| chr15 | 879916 | 0.86% | 3105 |
| chr16 | 1728729 | 1.91% | 5660 |
| chr17 | 1762037 | 2.12% | 5948 |
| chr18 | 388006 | 0.48% | 1498 |
| chr19 | 2358571 | 4.02% | 7307 |
| chr20 | 1120767 | 1.74% | 3715 |
| chr21 | 440990 | 0.94% | 1443 |
| chr22 | 1339442 | 2.64% | 4394 |
| chrX | 344790 | 0.22% | 1363 |
| chrY | 23159 | 0.04% | 100 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103479 | 100 | 4209 | 289.67 | 235 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF295UVV.bed.gz | 1.98 MB | 64f7fb6912ba101b8ea86ef598d76aab |
| ENCFF295UVV.tabix.bed.gz | 990.05 KB | 5016108501083138760dbc5520b4a78f |
| ENCFF295UVV.tabix.bed.gz.tbi | 235.37 KB | cdca5313a9f1f43b93d3affe2de09488 |
| genomic_resource.yaml | 2.36 KB | 9d376c6b28e65e462c72a0109dd3a22e |
| statistics/ |