Resource
| Id | Histone_ChIP-seq/ENCSR727TQS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR727TQS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN508NTH|/analyses/ENCAN508NTH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF043ADT|/files/ENCFF043ADT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF043ADT|/files/ENCFF043ADT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR727TQS | float |
Histone_ChIP-seq_ENCSR727TQS |
Histone_ChIP-seq ENCSR727TQS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"]
|
 |
[1.65, 31.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 209590833 | 6.51% | 210783 |
| chr1 | 20322849 | 8.16% | 19408 |
| chr2 | 16649062 | 6.87% | 17406 |
| chr3 | 13326759 | 6.72% | 14123 |
| chr4 | 8638458 | 4.54% | 9824 |
| chr5 | 11441456 | 6.30% | 11858 |
| chr6 | 11169291 | 6.54% | 11872 |
| chr7 | 10514893 | 6.60% | 11293 |
| chr8 | 9791967 | 6.75% | 10323 |
| chr9 | 9560840 | 6.91% | 9248 |
| chr10 | 10199645 | 7.62% | 10321 |
| chr11 | 12493087 | 9.25% | 11548 |
| chr12 | 9167606 | 6.88% | 9373 |
| chr13 | 5148462 | 4.50% | 5791 |
| chr14 | 7341751 | 6.86% | 7196 |
| chr15 | 6929387 | 6.79% | 6755 |
| chr16 | 7359448 | 8.15% | 6868 |
| chr17 | 10646295 | 12.79% | 8865 |
| chr18 | 4738966 | 5.90% | 5333 |
| chr19 | 7205571 | 12.29% | 6025 |
| chr20 | 5998312 | 9.31% | 5646 |
| chr21 | 1969790 | 4.22% | 2179 |
| chr22 | 4837231 | 9.52% | 4268 |
| chrX | 4139707 | 2.65% | 5260 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 210783 | 175 | 43341 | 994.34 | 642 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF829FBN.bed.gz | 4.78 MB | e31e8e78b41e7df5662feb27b432d602 |
| ENCFF829FBN.tabix.bed.gz | 2.17 MB | e5bbb7610249c02e713fa8b5abe00bba |
| ENCFF829FBN.tabix.bed.gz.tbi | 450.03 KB | 14ca964481a49ed7c9c33d6ad129e694 |
| genomic_resource.yaml | 2.85 KB | 7ab46bcf1f5f323b76c763d072fdc6da |
| statistics/ |