Resource
| Id | Histone_ChIP-seq/ENCSR726ZZX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR726ZZX [biosample_summary="Homo sapiens ACC112" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN488XTR|/analyses/ENCAN488XTR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF420ANX|/files/ENCFF420ANX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 31908766 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR726ZZX | float |
Histone_ChIP-seq_ENCSR726ZZX |
Histone_ChIP-seq ENCSR726ZZX [biosample_summary="Homo sapiens ACC112" and target="H3K4me1"]
|
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[1.64, 22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 133804215 | 4.16% | 143302 |
| chr1 | 12718963 | 5.11% | 13372 |
| chr2 | 12345647 | 5.10% | 12557 |
| chr3 | 10503832 | 5.30% | 10942 |
| chr4 | 7280094 | 3.83% | 7964 |
| chr5 | 8447980 | 4.65% | 8820 |
| chr6 | 8360371 | 4.89% | 9023 |
| chr7 | 6571119 | 4.12% | 7120 |
| chr8 | 6815321 | 4.70% | 7250 |
| chr9 | 6087054 | 4.40% | 6275 |
| chr10 | 6430402 | 4.81% | 6874 |
| chr11 | 6998759 | 5.18% | 7127 |
| chr12 | 6898053 | 5.18% | 7354 |
| chr13 | 3210306 | 2.81% | 3768 |
| chr14 | 4461895 | 4.17% | 4613 |
| chr15 | 4759244 | 4.67% | 4833 |
| chr16 | 3291526 | 3.64% | 3757 |
| chr17 | 4999107 | 6.00% | 5411 |
| chr18 | 3050298 | 3.80% | 3328 |
| chr19 | 1581843 | 2.70% | 2272 |
| chr20 | 2903737 | 4.51% | 3184 |
| chr21 | 1460757 | 3.13% | 1582 |
| chr22 | 1425628 | 2.81% | 1804 |
| chrUn_GL000195v1 | 1661 | 0.91% | 2 |
| chrX | 3113616 | 2.00% | 3934 |
| chrY | 87002 | 0.15% | 136 |
| 3341 contigs with no values (128894189 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 143302 | 205 | 14342 | 933.72 | 741 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF560UTN.bed.gz | 3.29 MB | 8528fa786c148a7be9bccef82ef9ecc6 |
| ENCFF560UTN.tabix.bed.gz | 1.47 MB | 6607664507ba6e15f43cfa31754d85e2 |
| ENCFF560UTN.tabix.bed.gz.tbi | 365.21 KB | 633e52450364f9ce0423cd593ce2de6a |
| genomic_resource.yaml | 1.93 KB | a220197708efdb610da3c00c785681bf |
| statistics/ |
