Resource
| Id | Histone_ChIP-seq/ENCSR724TOA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR724TOA [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN686PNQ|/analyses/ENCAN686PNQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF834YJK|/files/ENCFF834YJK/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32611120 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR724TOA | float |
Histone_ChIP-seq_ENCSR724TOA |
Histone_ChIP-seq ENCSR724TOA [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.76, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48549359 | 1.51% | 96716 |
| chr1 | 5227244 | 2.10% | 10033 |
| chr2 | 3725130 | 1.54% | 7491 |
| chr3 | 2911044 | 1.47% | 6051 |
| chr4 | 1797693 | 0.95% | 3883 |
| chr5 | 2463802 | 1.36% | 5194 |
| chr6 | 2491059 | 1.46% | 5223 |
| chr7 | 2213115 | 1.39% | 4635 |
| chr8 | 1787252 | 1.23% | 3729 |
| chr9 | 2382535 | 1.72% | 4683 |
| chr10 | 2677863 | 2.00% | 5127 |
| chr11 | 3161925 | 2.34% | 5989 |
| chr12 | 2123358 | 1.59% | 4328 |
| chr13 | 998131 | 0.87% | 2152 |
| chr14 | 1709273 | 1.60% | 3352 |
| chr15 | 1761016 | 1.73% | 3487 |
| chr16 | 1783825 | 1.97% | 3427 |
| chr17 | 2839840 | 3.41% | 5164 |
| chr18 | 930104 | 1.16% | 2003 |
| chr19 | 1780059 | 3.04% | 3297 |
| chr20 | 1486004 | 2.31% | 2816 |
| chr21 | 473244 | 1.01% | 976 |
| chr22 | 1353088 | 2.66% | 2452 |
| chrX | 472755 | 0.30% | 1224 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96716 | 170 | 6635 | 501.98 | 401 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF530ADZ.bed.gz | 1.87 MB | 159d4a00ed10a6768449f57b956f7911 |
| ENCFF530ADZ.tabix.bed.gz | 955.69 KB | 6e94cf4b5cccb24fc6e0a85ca47db203 |
| ENCFF530ADZ.tabix.bed.gz.tbi | 283.33 KB | 35ce38857cabb204535ddfc714a07ec6 |
| genomic_resource.yaml | 2.01 KB | 66563c011afd7649e2bb9e8285db87b7 |
| statistics/ |