Resource
| Id | Histone_ChIP-seq/ENCSR724MJX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR724MJX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN754PEE|/analyses/ENCAN754PEE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF451FGF|/files/ENCFF451FGF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF451FGF|/files/ENCFF451FGF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.38. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR724MJX | float |
Histone_ChIP-seq_ENCSR724MJX |
Histone_ChIP-seq ENCSR724MJX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K4me1"]
|
 |
[1.59, 14.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 174343290 | 5.42% | 148236 |
| chr1 | 17478477 | 7.02% | 14520 |
| chr2 | 14242241 | 5.88% | 12157 |
| chr3 | 12663803 | 6.39% | 10626 |
| chr4 | 7306175 | 3.84% | 6797 |
| chr5 | 9934992 | 5.47% | 8698 |
| chr6 | 9769105 | 5.72% | 8902 |
| chr7 | 8219904 | 5.16% | 7463 |
| chr8 | 7678900 | 5.29% | 6803 |
| chr9 | 7399190 | 5.35% | 6093 |
| chr10 | 9713659 | 7.26% | 7929 |
| chr11 | 9365164 | 6.93% | 7715 |
| chr12 | 8758860 | 6.57% | 7237 |
| chr13 | 4345737 | 3.80% | 3872 |
| chr14 | 5596285 | 5.23% | 4600 |
| chr15 | 6526171 | 6.40% | 5407 |
| chr16 | 5579603 | 6.18% | 4662 |
| chr17 | 8223910 | 9.88% | 6417 |
| chr18 | 3744665 | 4.66% | 3445 |
| chr19 | 5332328 | 9.10% | 4327 |
| chr20 | 4767671 | 7.40% | 3871 |
| chr21 | 1676239 | 3.59% | 1528 |
| chr22 | 4254360 | 8.37% | 3216 |
| chrX | 1716724 | 1.10% | 1882 |
| chrY | 49127 | 0.09% | 69 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148236 | 190 | 47476 | 1176.12 | 831 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF348PDL.bed.gz | 3.31 MB | e5c2df773c28c76119a5849491b259f2 |
| ENCFF348PDL.tabix.bed.gz | 1.52 MB | 3d972fda19906d03e28d283eac3d934e |
| ENCFF348PDL.tabix.bed.gz.tbi | 325.25 KB | 3b4298c1b6de88902c8c1181615d1fac |
| genomic_resource.yaml | 2.79 KB | 2d13d401444fc18059fc10010cc2dfd6 |
| statistics/ |