Resource
| Id | Histone_ChIP-seq/ENCSR720ZAX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR720ZAX [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN853NVM|/analyses/ENCAN853NVM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN853NVM|/analyses/ENCAN853NVM/} has in progress subobject document {9391a777-5de7-40f1-9efb-6b2ee2fb5ccf|/documents/9391a777-5de7-40f1-9efb-6b2ee2fb5ccf/} audit_warning: Processed alignments file {ENCFF621GTK|/files/ENCFF621GTK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 40685555 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF100RPU|/files/ENCFF100RPU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 40827867 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR720ZAX | float |
Histone_ChIP-seq_ENCSR720ZAX |
Histone_ChIP-seq ENCSR720ZAX [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H4K20me1"]
|
 |
[1.58, 18.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 92484864 | 2.87% | 68245 |
| chr1 | 9695307 | 3.89% | 6893 |
| chr2 | 7048939 | 2.91% | 5083 |
| chr3 | 5051891 | 2.55% | 3804 |
| chr4 | 3446910 | 1.81% | 2787 |
| chr5 | 4739158 | 2.61% | 3127 |
| chr6 | 4209863 | 2.46% | 3167 |
| chr7 | 4801442 | 3.01% | 3573 |
| chr8 | 3596599 | 2.48% | 2685 |
| chr9 | 4496418 | 3.25% | 3324 |
| chr10 | 4347931 | 3.25% | 3355 |
| chr11 | 4490347 | 3.32% | 3497 |
| chr12 | 4359053 | 3.27% | 3416 |
| chr13 | 1768690 | 1.55% | 1291 |
| chr14 | 2930320 | 2.74% | 2268 |
| chr15 | 3247167 | 3.18% | 2343 |
| chr16 | 3997180 | 4.42% | 3074 |
| chr17 | 5462006 | 6.56% | 3973 |
| chr18 | 2172256 | 2.70% | 1355 |
| chr19 | 4349383 | 7.42% | 3151 |
| chr20 | 2867057 | 4.45% | 2006 |
| chr21 | 997310 | 2.14% | 638 |
| chr22 | 3183080 | 6.26% | 2327 |
| chrX | 1226557 | 0.79% | 1108 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 68245 | 190 | 83965 | 1355.19 | 739 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF603XUN.bed.gz | 1.51 MB | 7f10dbd07e98ad0b7ba18da4c5b0b747 |
| ENCFF603XUN.tabix.bed.gz | 716.76 KB | 4e6cab986037080f11f12785192f572e |
| ENCFF603XUN.tabix.bed.gz.tbi | 157.9 KB | 228748987836df20b41fe5b793bd02bb |
| genomic_resource.yaml | 2.71 KB | 8b7847374d0e4528fd13baee895dfcc7 |
| statistics/ |