Resource

Id Histone_ChIP-seq/ENCSR720DYZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR720DYZ [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR720DYZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)
  • date_created: 2020-07-02T16:48:21.568851+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR720DYZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (77 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR720DYZ float

Histone_ChIP-seq_ENCSR720DYZ
Histone_ChIP-seq ENCSR720DYZ [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR720DYZ [1.92, 58.8]
n
34,355,139
mean
23.8
sd
12.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 343551391.07% 20335
chr1 3500552 1.41% 2079
chr2 2332308 0.96% 1320
chr3 1889334 0.95% 1108
chr4 1268855 0.67% 703
chr5 1591719 0.88% 891
chr6 1972124 1.15% 1130
chr7 1662557 1.04% 1026
chr8 1228197 0.85% 733
chr9 1425915 1.03% 852
chr10 1428149 1.07% 825
chr11 1890077 1.40% 1078
chr12 1794239 1.35% 1033
chr13 674811 0.59% 397
chr14 1119696 1.05% 654
chr15 1104259 1.08% 666
chr16 1399274 1.55% 823
chr17 2098988 2.52% 1250
chr18 568203 0.71% 340
chr19 2337468 3.99% 1503
chr20 894878 1.39% 554
chr21 346176 0.74% 214
chr22 826513 1.63% 515
chrX 963034 0.62% 621
chrY 37813 0.07% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20335 261 11778 1689.46 1567
global segment-length histogram

Files

Filename Size md5
ENCFF930IFQ.bed.gz 555.02 KB e86e6af8e21813fd2234756601861bc2
ENCFF930IFQ.tabix.bed.gz 239.75 KB b6d6b62f79bc83866498afd14b351b11
ENCFF930IFQ.tabix.bed.gz.tbi 140.2 KB b548fa9e8b2b71e5e427e148ff0a99e7
genomic_resource.yaml 1.86 KB cfb5d985c9c6bfeeb05d8edcd37e5846
statistics/