Resource
| Id | Histone_ChIP-seq/ENCSR717BNA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR717BNA [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (20 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN566TWJ|/analyses/ENCAN566TWJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF933YFD|/files/ENCFF933YFD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23281598 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR717BNA | float |
Histone_ChIP-seq_ENCSR717BNA |
Histone_ChIP-seq ENCSR717BNA [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K36me3"]
|
 |
[1.4, 43.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 105523209 | 3.28% | 114168 |
| chr1 | 10541924 | 4.23% | 11411 |
| chr1_KI270711v1_random | 1724 | 4.08% | 3 |
| chr2 | 6924834 | 2.86% | 8484 |
| chr3 | 5716367 | 2.88% | 6665 |
| chr4 | 3203027 | 1.68% | 3980 |
| chr4_GL000008v2_random | 1826 | 0.87% | 4 |
| chr5 | 4372532 | 2.41% | 5307 |
| chr6 | 3708932 | 2.17% | 4449 |
| chr7 | 5130123 | 3.22% | 5707 |
| chr8 | 2996107 | 2.06% | 3683 |
| chr9 | 4663976 | 3.37% | 4854 |
| chr10 | 3880747 | 2.90% | 4680 |
| chr11 | 5772096 | 4.27% | 5908 |
| chr12 | 6015211 | 4.51% | 6161 |
| chr13 | 1574230 | 1.38% | 2148 |
| chr14 | 3425571 | 3.20% | 4050 |
| chr14_GL000225v1_random | 488 | 0.23% | 2 |
| chr15 | 3539114 | 3.47% | 4183 |
| chr16 | 5765171 | 6.38% | 5259 |
| chr16_KI270728v1_random | 260 | 0.01% | 1 |
| chr17 | 7077698 | 8.50% | 6864 |
| chr17_GL000205v2_random | 699 | 0.38% | 1 |
| chr18 | 1372130 | 1.71% | 1818 |
| chr19 | 9513173 | 16.23% | 7525 |
| chr20 | 3769176 | 5.85% | 3871 |
| chr21 | 1311582 | 2.81% | 1347 |
| chr22 | 3818065 | 7.51% | 3479 |
| chr22_KI270733v1_random | 641 | 0.36% | 2 |
| chrUn_GL000216v2 | 926 | 0.52% | 1 |
| chrUn_GL000220v1 | 195 | 0.12% | 1 |
| chrUn_KI270438v1 | 310 | 0.28% | 1 |
| chrUn_KI270442v1 | 284 | 0.07% | 1 |
| chrUn_KI270754v1 | 480 | 1.19% | 2 |
| chrX | 1422886 | 0.91% | 2314 |
| chrY | 704 | <0.01% | 2 |
| 3331 contigs with no values (125492704 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 114168 | 180 | 23271 | 924.28 | 626 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF035NYO.bed.gz | 2.0 MB | 6e7fc99f2028d86223d2172cf0554307 |
| ENCFF035NYO.tabix.bed.gz | 1.04 MB | bdf2188856c176c3b0095fa6bfb10281 |
| ENCFF035NYO.tabix.bed.gz.tbi | 169.8 KB | 438d2f9be7aa5d56a72b32db5a836452 |
| genomic_resource.yaml | 2.01 KB | 9da93f7d701ebdab4d0be96da09cff98 |
| statistics/ |