Resource

Id Histone_ChIP-seq/ENCSR716ZJHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR716ZJH [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR716ZJH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9 stably expressing HES5
  • date_created: 2015-10-02T22:23:30.610038+00:00
  • date_released: 2016-05-20
  • doi: 10.17989/ENCSR716ZJH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: stably expressing C-terminal eGFP-tagged HES5
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR716ZJH float

Histone_ChIP-seq_ENCSR716ZJH
Histone_ChIP-seq ENCSR716ZJH [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR716ZJH [1.75, 44.2]
n
63,357,533
mean
15.9
sd
8.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 633575331.97% 46229
chr1 6204429 2.49% 4453
chr2 4413398 1.82% 3247
chr3 3497561 1.76% 2555
chr4 2622610 1.38% 1937
chr5 3182344 1.75% 2297
chr6 3877469 2.27% 2605
chr7 3129329 1.96% 2377
chr8 2435515 1.68% 1845
chr9 2578872 1.86% 1961
chr10 2750444 2.06% 2035
chr11 3362468 2.49% 2390
chr12 3216239 2.41% 2292
chr13 1381034 1.21% 1005
chr14 2078711 1.94% 1456
chr15 2118119 2.08% 1525
chr16 2352999 2.60% 1770
chr17 3526457 4.24% 2430
chr18 1165322 1.45% 910
chr19 3681255 6.28% 2658
chr20 1719763 2.67% 1307
chr21 590981 1.27% 457
chr22 1277582 2.51% 1047
chrX 2194632 1.41% 1670
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46229 200 20795 1370.51 984
global segment-length histogram

Files

Filename Size md5
ENCFF473AUA.bed.gz 1.21 MB b6b791337d5e1a6454006941a12d04ad
ENCFF473AUA.tabix.bed.gz 526.46 KB 328d6880a3e418ee691a16ce7539b384
ENCFF473AUA.tabix.bed.gz.tbi 221.42 KB f33802e175f84b9f41a5fce6c4938beb
genomic_resource.yaml 1.72 KB c84b0ad623e5558543ea75e55879621a
statistics/