Resource

Id Histone_ChIP-seq/ENCSR713YDDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR713YDD [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR713YDD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (59 years)
  • date_created: 2021-01-28T22:01:56.520071+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR713YDD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR713YDD float

Histone_ChIP-seq_ENCSR713YDD
Histone_ChIP-seq ENCSR713YDD [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR713YDD [1.63, 52.4]
n
39,851,643
mean
23.4
sd
10.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 398516431.24% 22302
chr1 3994974 1.60% 2238
chr2 2780355 1.15% 1521
chr3 2297723 1.16% 1240
chr4 1645465 0.87% 893
chr5 1820644 1.00% 1019
chr6 2258955 1.32% 1235
chr7 2002527 1.26% 1125
chr8 1508149 1.04% 844
chr9 1686939 1.22% 947
chr10 1859138 1.39% 1024
chr11 2141437 1.59% 1176
chr12 2047482 1.54% 1086
chr13 845354 0.74% 468
chr14 1335260 1.25% 733
chr15 1312063 1.29% 727
chr16 1573442 1.74% 902
chr17 2236253 2.69% 1262
chr18 664957 0.83% 384
chr19 2432708 4.15% 1479
chr20 1008242 1.56% 574
chr21 368864 0.79% 219
chr22 882290 1.74% 503
chrX 1148422 0.74% 703
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22302 233 20530 1786.91 1590
global segment-length histogram

Files

Filename Size md5
ENCFF200ITL.bed.gz 582.69 KB a900b2629155f4bab7473e383674b52b
ENCFF200ITL.tabix.bed.gz 257.95 KB 0880c8bec40a65884b2a5c59ad91a549
ENCFF200ITL.tabix.bed.gz.tbi 150.08 KB 95281d130cb6850e54faa8e5d82dc879
genomic_resource.yaml 1.5 KB 78e3aeaf95d817b53562ca956fde55be
statistics/