Resource
| Id | Histone_ChIP-seq/ENCSR705SZP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR705SZP [biosample_summary="Homo sapiens PC-9" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN135YEB|/analyses/ENCAN135YEB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF347OCC|/files/ENCFF347OCC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 37786689 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR705SZP | float |
Histone_ChIP-seq_ENCSR705SZP |
Histone_ChIP-seq ENCSR705SZP [biosample_summary="Homo sapiens PC-9" and target="H3K79me2"]
|
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[1.49, 21.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 107574476 | 3.34% | 63019 |
| chr1 | 10858411 | 4.36% | 6490 |
| chr2 | 9568148 | 3.95% | 5121 |
| chr3 | 7307644 | 3.69% | 4078 |
| chr4 | 3541117 | 1.86% | 2547 |
| chr5 | 5503861 | 3.03% | 2874 |
| chr6 | 5735356 | 3.36% | 3542 |
| chr7 | 6133892 | 3.85% | 3469 |
| chr8 | 4397377 | 3.03% | 2671 |
| chr9 | 4032435 | 2.91% | 2596 |
| chr10 | 4364498 | 3.26% | 2901 |
| chr11 | 5783551 | 4.28% | 3195 |
| chr12 | 5874161 | 4.41% | 3311 |
| chr13 | 2643994 | 2.31% | 1590 |
| chr14 | 3800121 | 3.55% | 2170 |
| chr15 | 3308908 | 3.24% | 1995 |
| chr16 | 4358623 | 4.82% | 2505 |
| chr17 | 5454354 | 6.55% | 3249 |
| chr18 | 2064290 | 2.57% | 1296 |
| chr19 | 3903060 | 6.66% | 2292 |
| chr20 | 3241006 | 5.03% | 1654 |
| chr21 | 970672 | 2.08% | 576 |
| chr22 | 2697820 | 5.31% | 1509 |
| chrX | 2031177 | 1.30% | 1388 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 63019 | 200 | 67076 | 1707.02 | 893 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF292NSP.bed.gz | 1.45 MB | aef51139842f06298a764fe46e8bf8e4 |
| ENCFF292NSP.tabix.bed.gz | 668.45 KB | 62ca9c7062dc4916d92b63938f7987a7 |
| ENCFF292NSP.tabix.bed.gz.tbi | 119.72 KB | 0ab747a6798edb4ca3caa65532da9971 |
| genomic_resource.yaml | 1.87 KB | 10bda960e706f6d9e02e93811ab65eaa |
| statistics/ |
