Resource
| Id | Histone_ChIP-seq/ENCSR704JQF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR704JQF [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN681ZVX|/analyses/ENCAN681ZVX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF507OYY|/files/ENCFF507OYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF507OYY|/files/ENCFF507OYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.52. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR704JQF | float |
Histone_ChIP-seq_ENCSR704JQF |
Histone_ChIP-seq ENCSR704JQF [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K36me3"]
|
 |
[1.63, 16.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 199960093 | 6.22% | 104781 |
| chr1 | 20177284 | 8.10% | 10126 |
| chr2 | 16827049 | 6.95% | 8487 |
| chr3 | 13500418 | 6.81% | 7039 |
| chr4 | 9029506 | 4.75% | 4930 |
| chr5 | 10536666 | 5.80% | 5251 |
| chr6 | 9987598 | 5.85% | 5315 |
| chr7 | 9348233 | 5.87% | 5434 |
| chr8 | 7432497 | 5.12% | 4061 |
| chr9 | 8177333 | 5.91% | 4575 |
| chr10 | 9491068 | 7.09% | 5027 |
| chr11 | 9389630 | 6.95% | 4728 |
| chr12 | 11155944 | 8.37% | 5318 |
| chr13 | 4946985 | 4.33% | 2757 |
| chr14 | 7183477 | 6.71% | 3358 |
| chr15 | 7752416 | 7.60% | 3787 |
| chr16 | 7167524 | 7.93% | 3628 |
| chr17 | 10257126 | 12.32% | 4912 |
| chr18 | 3637100 | 4.53% | 2077 |
| chr19 | 8033813 | 13.71% | 4536 |
| chr20 | 5278088 | 8.19% | 2684 |
| chr21 | 2124885 | 4.55% | 1117 |
| chr22 | 4243676 | 8.35% | 2328 |
| chrX | 3993208 | 2.56% | 3094 |
| chrY | 288569 | 0.50% | 212 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104781 | 195 | 101412 | 1908.36 | 818 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF693GML.bed.gz | 2.3 MB | 7a3d490570e7605ca29d6b7ad6ed67dd |
| ENCFF693GML.tabix.bed.gz | 1.06 MB | 8f141a7dfe6d50636215d2ed6a71889a |
| ENCFF693GML.tabix.bed.gz.tbi | 152.52 KB | 9dc08186ac032527d69bc72191125402 |
| genomic_resource.yaml | 2.79 KB | 7fb5da3d95e5b0880f37663025e659ed |
| statistics/ |