Resource
| Id | Histone_ChIP-seq/ENCSR704BRU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR704BRU [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN145JPG|/analyses/ENCAN145JPG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN145JPG|/analyses/ENCAN145JPG/} has in progress subobject document {6e0cd75d-18a1-4348-a8dc-ccd08d3b25c5|/documents/6e0cd75d-18a1-4348-a8dc-ccd08d3b25c5/} audit_not_compliant: Processed unfiltered alignments file {ENCFF031STP|/files/ENCFF031STP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28561796 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF438TGC|/files/ENCFF438TGC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27788090 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR704BRU | float |
Histone_ChIP-seq_ENCSR704BRU |
Histone_ChIP-seq ENCSR704BRU [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K9me3"]
|
 |
[1.76, 42.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28502159 | 0.89% | 106247 |
| chr1 | 2217650 | 0.89% | 7796 |
| chr2 | 1565220 | 0.65% | 6616 |
| chr3 | 1036338 | 0.52% | 4465 |
| chr4 | 1111859 | 0.58% | 4523 |
| chr5 | 1851269 | 1.02% | 6502 |
| chr6 | 988949 | 0.58% | 4137 |
| chr7 | 2563659 | 1.61% | 8436 |
| chr8 | 1726465 | 1.19% | 5784 |
| chr9 | 799522 | 0.58% | 3441 |
| chr10 | 1437013 | 1.07% | 5047 |
| chr11 | 1039275 | 0.77% | 4427 |
| chr12 | 1341944 | 1.01% | 4827 |
| chr13 | 586780 | 0.51% | 2250 |
| chr14 | 947259 | 0.88% | 3333 |
| chr15 | 602539 | 0.59% | 2392 |
| chr16 | 1037500 | 1.15% | 4385 |
| chr17 | 1014945 | 1.22% | 4307 |
| chr18 | 518161 | 0.64% | 2120 |
| chr19 | 2060846 | 3.52% | 8070 |
| chr20 | 983498 | 1.53% | 3880 |
| chr21 | 780636 | 1.67% | 3105 |
| chr22 | 1852303 | 3.64% | 4408 |
| chrX | 346261 | 0.22% | 1591 |
| chrY | 92268 | 0.16% | 405 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106247 | 115 | 8278 | 268.26 | 199 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF839TYU.bed.gz | 1.78 MB | 776be5d2eeb8aee36ee81ac81a8f85bb |
| ENCFF839TYU.tabix.bed.gz | 954.39 KB | 63c3ecc1dbd3195db7f87da7475bff25 |
| ENCFF839TYU.tabix.bed.gz.tbi | 346.73 KB | dbe3e29b0c4ab140492f4a8a27cb9b5b |
| genomic_resource.yaml | 2.63 KB | 2ba1eee4f9e955bd638e4c5140b8c353 |
| statistics/ |