Resource
| Id | Histone_ChIP-seq/ENCSR703CYD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR703CYD [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (25 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN091CCK|/analyses/ENCAN091CCK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF182IWM|/files/ENCFF182IWM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 16980285 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR703CYD | float |
Histone_ChIP-seq_ENCSR703CYD |
Histone_ChIP-seq ENCSR703CYD [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K4me3"]
|
 |
[1.93, 97.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39882750 | 1.24% | 59125 |
| chr1 | 3655032 | 1.47% | 5211 |
| chr2 | 2704082 | 1.12% | 4113 |
| chr3 | 2339236 | 1.18% | 3416 |
| chr4 | 1694586 | 0.89% | 2488 |
| chr5 | 2075436 | 1.14% | 3013 |
| chr6 | 2334858 | 1.37% | 3335 |
| chr7 | 1996604 | 1.25% | 3108 |
| chr8 | 1495227 | 1.03% | 2332 |
| chr9 | 1570241 | 1.13% | 2400 |
| chr10 | 1812150 | 1.35% | 2783 |
| chr11 | 2100869 | 1.56% | 3062 |
| chr12 | 2281367 | 1.71% | 3125 |
| chr13 | 869304 | 0.76% | 1343 |
| chr14 | 1196757 | 1.12% | 1759 |
| chr15 | 1262687 | 1.24% | 1871 |
| chr16 | 1323924 | 1.47% | 2083 |
| chr17 | 1946957 | 2.34% | 2906 |
| chr18 | 668617 | 0.83% | 1111 |
| chr19 | 3486686 | 5.95% | 4859 |
| chr20 | 889549 | 1.38% | 1386 |
| chr21 | 401587 | 0.86% | 633 |
| chr22 | 687929 | 1.35% | 1093 |
| chrX | 1084299 | 0.69% | 1680 |
| chrY | 4766 | 0.01% | 15 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59125 | 170 | 11115 | 674.55 | 506 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF784ENS.bed.gz | 1.31 MB | 7aef701cfb961deec59f1cec4ec625cf |
| ENCFF784ENS.tabix.bed.gz | 616.66 KB | be9067eecc01afa4b86544ece5b4e154 |
| ENCFF784ENS.tabix.bed.gz.tbi | 242.16 KB | a68b8e5a4b728c49769fbae4ddc4a734 |
| genomic_resource.yaml | 2.17 KB | f84754bfc97f92d8f38745596e7467d9 |
| statistics/ |