Resource

Id Histone_ChIP-seq/ENCSR701ZDBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR701ZDB [biosample_summary="Homo sapiens OCI-LY3" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR701ZDB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0006710/
  • biosample_summary: Homo sapiens OCI-LY3
  • date_created: 2014-02-20T05:05:37.934338+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR701ZDB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR701ZDB float

Histone_ChIP-seq_ENCSR701ZDB
Histone_ChIP-seq ENCSR701ZDB [biosample_summary="Homo sapiens OCI-LY3" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR701ZDB [1.59, 36.8]
n
121,926,925
mean
12.1
sd
6.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1219269253.79% 105301
chr1 11435429 4.59% 9653
chr2 9667932 3.99% 8569
chr3 8532300 4.30% 7449
chr4 6024597 3.17% 5637
chr5 5989133 3.30% 5339
chr6 7663042 4.49% 6541
chr7 6104814 3.83% 5363
chr8 5317342 3.66% 4693
chr9 4660334 3.37% 4140
chr10 4834330 3.61% 4310
chr11 6398153 4.74% 5290
chr12 6543987 4.91% 5450
chr13 3293422 2.88% 3028
chr14 4107077 3.84% 3502
chr15 3968671 3.89% 3277
chr16 3770791 4.17% 3174
chr17 5184937 6.23% 4229
chr18 3138179 3.90% 2675
chr19 4233771 7.22% 3351
chr20 3212474 4.98% 2647
chr21 1244988 2.67% 1160
chr22 2342591 4.61% 1834
chrX 4021296 2.58% 3761
chrY 237335 0.41% 229
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105301 178 26102 1157.89 906
global segment-length histogram

Files

Filename Size md5
ENCFF577XYN.bed.gz 2.81 MB aa5a98367bfb3c65a13eb9e4ead4e877
ENCFF577XYN.tabix.bed.gz 1.16 MB 246561fca3735f6bac665b890e8ef80b
ENCFF577XYN.tabix.bed.gz.tbi 368.62 KB 51eae99528353a7217705d0c2c9c5bc8
genomic_resource.yaml 1.59 KB 1273783acc759bc4f1d2a3d658090648
statistics/