Resource
| Id | Histone_ChIP-seq/ENCSR698XRC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR698XRC [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR698XRC | float |
Histone_ChIP-seq_ENCSR698XRC |
Histone_ChIP-seq ENCSR698XRC [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"]
|
 |
[1.23, 13.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 238727327 | 7.42% | 222388 |
| chr1 | 23115430 | 9.28% | 20836 |
| chr1_KI270711v1_random | 6369 | 15.09% | 8 |
| chr2 | 19514331 | 8.06% | 18603 |
| chr3 | 14958631 | 7.54% | 14521 |
| chr4 | 9956793 | 5.23% | 10559 |
| chr5 | 13046414 | 7.19% | 12563 |
| chr6 | 10191104 | 5.97% | 11082 |
| chr7 | 12212816 | 7.66% | 12195 |
| chr8 | 11654590 | 8.03% | 9248 |
| chr9 | 10149609 | 7.33% | 9678 |
| chr10 | 11272525 | 8.43% | 10884 |
| chr11 | 10767219 | 7.97% | 9528 |
| chr12 | 12380247 | 9.29% | 11071 |
| chr13 | 5524458 | 4.83% | 5512 |
| chr14 | 7577344 | 7.08% | 7449 |
| chr14_GL000194v1_random | 2811 | 1.47% | 6 |
| chr15 | 8853793 | 8.68% | 8113 |
| chr16 | 9776235 | 10.82% | 8245 |
| chr17 | 12336609 | 14.82% | 10532 |
| chr17_GL000205v2_random | 2215 | 1.19% | 5 |
| chr18 | 4627287 | 5.76% | 4661 |
| chr19 | 12221952 | 20.85% | 8428 |
| chr20 | 6457713 | 10.02% | 5639 |
| chr21 | 2937186 | 6.29% | 2762 |
| chr22 | 5176993 | 10.19% | 4435 |
| chrUn_GL000195v1 | 7090 | 3.88% | 15 |
| chrUn_GL000219v1 | 23470 | 13.10% | 25 |
| chrUn_KI270438v1 | 2763 | 2.46% | 4 |
| chrUn_KI270519v1 | 416 | 0.30% | 1 |
| chrUn_KI270744v1 | 255 | 0.15% | 1 |
| chrX | 3971830 | 2.55% | 5777 |
| chrY | 829 | <0.01% | 2 |
| 3334 contigs with no values (127876618 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 222388 | 250 | 45635 | 1073.47 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF437RWP.bed.gz | 4.16 MB | 49af3bdbc988869b9768c697c28b558f |
| ENCFF437RWP.tabix.bed.gz | 2.08 MB | b501fe66db520511a5858abaf0c27295 |
| ENCFF437RWP.tabix.bed.gz.tbi | 213.9 KB | dd1ea242bbaece138a67b205598b6647 |
| genomic_resource.yaml | 3.12 KB | ee00007db3d12846900123f017be23b8 |
| statistics/ |