Resource

Id Histone_ChIP-seq/ENCSR695SCQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR695SCQ [biosample_summary="Homo sapiens PC-3" and target="H3K79me2"]
Description
Labels
  • accession: ENCSR695SCQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:41:33.864460+00:00
  • date_released: 2017-01-13
  • doi: 10.17989/ENCSR695SCQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Cross-correlation metrics are too poor to permit further analysis.
  • target: H3K79me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR695SCQ float

Histone_ChIP-seq_ENCSR695SCQ
Histone_ChIP-seq ENCSR695SCQ [biosample_summary="Homo sapiens PC-3" and target="H3K79me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR695SCQ [1.34, 28.7]
n
118,334,629
mean
7.21
sd
4.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1183346293.68% 65690
chr1 12076666 4.85% 6749
chr2 9894889 4.09% 5073
chr3 8256667 4.16% 4213
chr4 4588869 2.41% 2760
chr5 5820923 3.21% 3165
chr6 6121872 3.58% 3578
chr7 6092410 3.82% 3585
chr8 5342693 3.68% 2736
chr9 4500392 3.25% 2650
chr10 5793857 4.33% 3336
chr11 5937872 4.40% 3358
chr12 6118771 4.59% 3246
chr13 2728945 2.39% 1654
chr14 4446922 4.15% 2371
chr15 3888486 3.81% 2174
chr16 3967232 4.39% 2281
chr17 5961100 7.16% 3304
chr18 2231189 2.78% 1381
chr19 4309398 7.35% 2468
chr20 3329507 5.17% 1655
chr21 1484305 3.18% 775
chr22 2488870 4.90% 1450
chrX 2952794 1.89% 1728
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65690 205 54822 1801.41 943
global segment-length histogram

Files

Filename Size md5
ENCFF463SFJ.bed.gz 1.59 MB e992c6661a03942d600ee66d57e4add2
ENCFF463SFJ.tabix.bed.gz 708.17 KB aec9755defef1bd5706e1c5853b5f51d
ENCFF463SFJ.tabix.bed.gz.tbi 118.2 KB 79fa22466f72a41e6262a36887dd57b2
genomic_resource.yaml 1.65 KB 9b1fbd28c0ca31d630fb9d65972349f8
statistics/