Resource
| Id | Histone_ChIP-seq/ENCSR695HYL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR695HYL [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN601EBJ|/analyses/ENCAN601EBJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF764HMA|/files/ENCFF764HMA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF764HMA|/files/ENCFF764HMA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.93. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR695HYL | float |
Histone_ChIP-seq_ENCSR695HYL |
Histone_ChIP-seq ENCSR695HYL [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K79me2"]
|
 |
[1.41, 8.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 173150856 | 5.38% | 93933 |
| chr1 | 16816682 | 6.75% | 8986 |
| chr2 | 13569298 | 5.60% | 6932 |
| chr3 | 12108530 | 6.11% | 6757 |
| chr4 | 8152188 | 4.29% | 4520 |
| chr5 | 9033626 | 4.98% | 4819 |
| chr6 | 9780523 | 5.73% | 5416 |
| chr7 | 9323843 | 5.85% | 5175 |
| chr8 | 7388151 | 5.09% | 4027 |
| chr9 | 7901411 | 5.71% | 4385 |
| chr10 | 8727346 | 6.52% | 4487 |
| chr11 | 8344516 | 6.18% | 4927 |
| chr12 | 8622140 | 6.47% | 4701 |
| chr13 | 4179229 | 3.65% | 2159 |
| chr14 | 5903208 | 5.51% | 3205 |
| chr15 | 6151222 | 6.03% | 3121 |
| chr16 | 6072429 | 6.72% | 3329 |
| chr17 | 8290419 | 9.96% | 4450 |
| chr18 | 3721189 | 4.63% | 2134 |
| chr19 | 6256602 | 10.67% | 3407 |
| chr20 | 4300956 | 6.67% | 2006 |
| chr21 | 1704666 | 3.65% | 865 |
| chr22 | 3868311 | 7.61% | 2066 |
| chrX | 2932720 | 1.88% | 2058 |
| chrY | 1651 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 93933 | 225 | 133762 | 1843.34 | 788 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF999FNX.bed.gz | 2.21 MB | efdc4bbe4332f33bd20dfa6b5b5069c3 |
| ENCFF999FNX.tabix.bed.gz | 1007.67 KB | 9bf4b90b73fc973da1ac163b84017691 |
| ENCFF999FNX.tabix.bed.gz.tbi | 139.51 KB | 1916caa41f564ba6a5a33a86734674eb |
| genomic_resource.yaml | 2.74 KB | 204d4e4398c09d9f84c09eb25f440780 |
| statistics/ |