Resource

Id Histone_ChIP-seq/ENCSR694PCOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR694PCO [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR694PCO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:18.522245+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR694PCO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (15 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR694PCO float

Histone_ChIP-seq_ENCSR694PCO
Histone_ChIP-seq ENCSR694PCO [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR694PCO [1.78, 35.7]
n
28,081,881
mean
5.12
sd
1.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 280818810.87% 39475
chr1 1831545 0.74% 2661
chr2 2019298 0.83% 2982
chr3 1716440 0.87% 2539
chr4 1506347 0.79% 2185
chr5 1681358 0.93% 2416
chr6 1340952 0.79% 2024
chr7 1619401 1.02% 2350
chr8 1610526 1.11% 2222
chr9 1094366 0.79% 1554
chr10 1062391 0.79% 1498
chr11 1343332 0.99% 1818
chr12 1380506 1.04% 1872
chr13 758951 0.66% 1133
chr14 919422 0.86% 1329
chr15 723010 0.71% 1017
chr16 691431 0.77% 961
chr17 580341 0.70% 796
chr18 566878 0.71% 825
chr19 2380194 4.06% 2409
chr20 417122 0.65% 612
chr21 472193 1.01% 649
chr22 408488 0.80% 584
chrX 1957389 1.25% 3039
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39475 205 20585 711.38 597
global segment-length histogram

Files

Filename Size md5
ENCFF223QFR.bed.gz 770.22 KB 60a46110d5668158a9f30cd07d232378
ENCFF223QFR.tabix.bed.gz 387.08 KB 2ca59f333cbe5c5c9744ff741b6e8db5
ENCFF223QFR.tabix.bed.gz.tbi 209.1 KB 05446003ecd36cb9db363cbb941b5667
genomic_resource.yaml 1.57 KB bceeb2dabc108997236a917096a1d559
statistics/