Resource
| Id | Histone_ChIP-seq/ENCSR692CTK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR692CTK [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN551COK|/analyses/ENCAN551COK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN551COK|/analyses/ENCAN551COK/} has in progress subobject document {cdf43670-c1fb-46e4-86ab-26f4aac5f40d|/documents/cdf43670-c1fb-46e4-86ab-26f4aac5f40d/} audit_not_compliant: Processed alignments file {ENCFF972LPQ|/files/ENCFF972LPQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28529417 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF418RUM|/files/ENCFF418RUM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36010117 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR692CTK | float |
Histone_ChIP-seq_ENCSR692CTK |
Histone_ChIP-seq ENCSR692CTK [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K27me3"]
|
 |
[1.81, 10.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5451167 | 0.17% | 10121 |
| chr1 | 468403 | 0.19% | 862 |
| chr2 | 454863 | 0.19% | 786 |
| chr3 | 154322 | 0.08% | 333 |
| chr4 | 279227 | 0.15% | 496 |
| chr5 | 304910 | 0.17% | 588 |
| chr6 | 283732 | 0.17% | 596 |
| chr7 | 323012 | 0.20% | 580 |
| chr8 | 226382 | 0.16% | 444 |
| chr9 | 234507 | 0.17% | 447 |
| chr10 | 331304 | 0.25% | 588 |
| chr11 | 262594 | 0.19% | 481 |
| chr12 | 285928 | 0.21% | 543 |
| chr13 | 102137 | 0.09% | 194 |
| chr14 | 152687 | 0.14% | 304 |
| chr15 | 181758 | 0.18% | 311 |
| chr16 | 205722 | 0.23% | 390 |
| chr17 | 397593 | 0.48% | 663 |
| chr18 | 95410 | 0.12% | 194 |
| chr19 | 294086 | 0.50% | 548 |
| chr20 | 187396 | 0.29% | 347 |
| chr21 | 72329 | 0.15% | 132 |
| chr22 | 118249 | 0.23% | 207 |
| chrX | 34616 | 0.02% | 87 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 10121 | 153 | 6961 | 538.6 | 363 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF153BQX.bed.gz | 205.42 KB | 72bb6c84974f1f078f6e0dd96680f106 |
| ENCFF153BQX.tabix.bed.gz | 103.49 KB | 3f8164ec5adadfe3bc3fbc6bd4e7fa24 |
| ENCFF153BQX.tabix.bed.gz.tbi | 42.45 KB | b5b3eee3f0b8ecdaae643a89a78ea0e0 |
| genomic_resource.yaml | 2.68 KB | 489ff5af95a5267d19c505478d00cb03 |
| statistics/ |