Resource

Id Histone_ChIP-seq/ENCSR691JHZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR691JHZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR691JHZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:53:43.931547+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR691JHZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR691JHZ float

Histone_ChIP-seq_ENCSR691JHZ
Histone_ChIP-seq ENCSR691JHZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR691JHZ [1.83, 76]
n
69,680,471
mean
29.5
sd
18.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 696804712.17% 39549
chr1 6793622 2.73% 3757
chr2 4869193 2.01% 2874
chr3 4087193 2.06% 2270
chr4 2826130 1.49% 1622
chr5 3541223 1.95% 2027
chr6 3985469 2.33% 2284
chr7 3386374 2.13% 2027
chr8 2785757 1.92% 1646
chr9 2912670 2.10% 1684
chr10 3048489 2.28% 1784
chr11 3804442 2.82% 2024
chr12 3659484 2.75% 1994
chr13 1627609 1.42% 1012
chr14 2191901 2.05% 1248
chr15 2171494 2.13% 1260
chr16 2712110 3.00% 1520
chr17 3833225 4.60% 2107
chr18 1323779 1.65% 807
chr19 4106716 7.01% 2227
chr20 1805577 2.80% 1033
chr21 693105 1.48% 422
chr22 1591854 3.13% 870
chrX 1923055 1.23% 1050
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39549 200 37836 1761.88 1181
global segment-length histogram

Files

Filename Size md5
ENCFF285XKT.bed.gz 958.15 KB 61ca2adf48279ffd773d226d37e50a0b
ENCFF285XKT.tabix.bed.gz 435.71 KB 389e4816e42d7efb31437b3a40be6b90
ENCFF285XKT.tabix.bed.gz.tbi 213.69 KB 44e4dfbce4c0839ed38c1f219201c43d
genomic_resource.yaml 1.75 KB 78b77f24b07609a18f924587cab1172a
statistics/