Resource
| Id | Histone_ChIP-seq/ENCSR690UYB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR690UYB [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (20 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN630FYQ|/analyses/ENCAN630FYQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF761YDT|/files/ENCFF761YDT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 22187489 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR690UYB | float |
Histone_ChIP-seq_ENCSR690UYB |
Histone_ChIP-seq ENCSR690UYB [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K36me3"]
|
 |
[1.79, 17.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 122101470 | 3.80% | 123582 |
| chr1 | 12277003 | 4.93% | 12385 |
| chr2 | 8566219 | 3.54% | 9569 |
| chr3 | 6977994 | 3.52% | 7638 |
| chr4 | 4196841 | 2.21% | 4795 |
| chr5 | 5460651 | 3.01% | 6116 |
| chr6 | 4794868 | 2.81% | 5246 |
| chr7 | 5897879 | 3.70% | 6131 |
| chr8 | 3716172 | 2.56% | 4230 |
| chr9 | 5266091 | 3.81% | 5225 |
| chr10 | 4605487 | 3.44% | 5066 |
| chr11 | 6287191 | 4.65% | 5914 |
| chr12 | 7007910 | 5.26% | 6738 |
| chr13 | 2099658 | 1.84% | 2582 |
| chr14 | 4227585 | 3.95% | 4536 |
| chr15 | 4378350 | 4.29% | 4665 |
| chr16 | 6080286 | 6.73% | 5239 |
| chr17 | 7613476 | 9.14% | 6912 |
| chr18 | 1889037 | 2.35% | 2253 |
| chr19 | 9861963 | 16.82% | 7308 |
| chr20 | 4043084 | 6.27% | 3851 |
| chr21 | 1471330 | 3.15% | 1461 |
| chr22 | 3844228 | 7.56% | 3218 |
| chrX | 1477294 | 0.95% | 2400 |
| chrY | 60873 | 0.11% | 104 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 123582 | 185 | 22054 | 988.02 | 669 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF596TAP.bed.gz | 2.2 MB | 9c784e5c6414895ea2f0448a08eb549e |
| ENCFF596TAP.tabix.bed.gz | 1.14 MB | d135ae16c231aedb0702bc3b6ffcc0e4 |
| ENCFF596TAP.tabix.bed.gz.tbi | 172.32 KB | 10dfd7727344f63ee22831f588632798 |
| genomic_resource.yaml | 2.02 KB | b03570a1aefc1bf33533ae6fb641c2fa |
| statistics/ |