Resource

Id Histone_ChIP-seq/ENCSR688SJYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR688SJY [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR688SJY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:42:09.974654+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR688SJY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR688SJY float

Histone_ChIP-seq_ENCSR688SJY
Histone_ChIP-seq ENCSR688SJY [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR688SJY [1.45, 8.47]
n
1,454,536
mean
4.28
sd
0.868

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 14545360.05% 3649
chr1 89085 0.04% 242
chr2 104721 0.04% 298
chr3 91105 0.05% 242
chr4 103646 0.05% 282
chr4_GL000008v2_random 979 0.47% 1
chr5 117984 0.06% 288
chr6 111827 0.07% 294
chr7 86877 0.05% 231
chr8 72687 0.05% 196
chr9 46683 0.03% 114
chr10 61193 0.05% 166
chr11 1928 <0.01% 6
chr12 89097 0.07% 226
chr13 26765 0.02% 78
chr14 44102 0.04% 121
chr15 19429 0.02% 50
chr16 38487 0.04% 88
chr17 23114 0.03% 54
chr17_KI270729v1_random 944 0.34% 2
chr17_KI270730v1_random 338 0.30% 1
chr18 36720 0.05% 103
chr19 208653 0.36% 384
chr20 36963 0.06% 96
chr21 12054 0.03% 32
chr22 9969 0.02% 23
chr22_KI270736v1_random 1006 0.55% 3
chrM 8626 52.06% 7
chrUn_GL000216v2 1914 1.08% 5
chrUn_GL000224v1 891 0.50% 2
chrUn_KI270438v1 310 0.28% 1
chrUn_KI270442v1 1348 0.34% 3
chrUn_KI270466v1 345 27.98% 1
chrUn_KI270467v1 1044 26.63% 1
chrX 2586 <0.01% 6
chrY 1116 <0.01% 2
3331 contigs with no values (127409477 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3649 200 3007 398.61 345
global segment-length histogram

Files

Filename Size md5
ENCFF038HXZ.bed.gz 68.08 KB 7e6128d859fb6493c11ffd09d70e5350
ENCFF038HXZ.tabix.bed.gz 36.82 KB 0e66d150384e02db2155fcb5cdc5239e
ENCFF038HXZ.tabix.bed.gz.tbi 36.98 KB fd6f92b30b8bd9a9ee39c96e644e0bcf
genomic_resource.yaml 2.54 KB a19e1c0a1975934fa4cb9e39ce0f0571
statistics/