Resource

Id Histone_ChIP-seq/ENCSR688OUZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR688OUZ [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR688OUZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000540/
  • biosample_summary: Homo sapiens neuron originated from H9
  • date_created: 2015-09-15T19:48:38.488156+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR688OUZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR688OUZ float

Histone_ChIP-seq_ENCSR688OUZ
Histone_ChIP-seq ENCSR688OUZ [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR688OUZ [1.75, 18.3]
n
41,723,385
mean
5.8
sd
2.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 417233851.30% 69183
chr1 4654567 1.87% 7444
chr1_KI270713v1_random 539 1.32% 2
chr2 2763066 1.14% 4412
chr3 1977378 1.00% 3409
chr4 1741108 0.92% 2771
chr5 2114257 1.16% 3413
chr6 2145551 1.26% 3534
chr7 1837550 1.15% 2888
chr8 1665145 1.15% 2709
chr9 1906695 1.38% 2959
chr10 2421998 1.81% 3840
chr11 2536909 1.88% 4256
chr12 1773482 1.33% 2816
chr13 582323 0.51% 1042
chr14 1672807 1.56% 2755
chr15 1368032 1.34% 2439
chr16 1286401 1.42% 2194
chr17 2555693 3.07% 3883
chr17_GL000205v2_random 3479 1.87% 8
chr18 809484 1.01% 1476
chr19 1389273 2.37% 2298
chr20 1698601 2.64% 2770
chr21 446931 0.96% 749
chr22 988218 1.94% 1701
chrUn_KI270744v1 274 0.16% 1
chrUn_KI270751v1 183 0.12% 1
chrX 1383441 0.89% 3413
3339 contigs with no values (185758950 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69183 150 18205 603.09 399
global segment-length histogram

Files

Filename Size md5
ENCFF218NAI.bed.gz 1.42 MB 409b0f983fcff56976255d8e645584ff
ENCFF218NAI.tabix.bed.gz 694.81 KB e61de75128b707cab940a8f1161476c4
ENCFF218NAI.tabix.bed.gz.tbi 183.28 KB a195a708a7be4598b497049cbf40a090
genomic_resource.yaml 1.96 KB b739037147c2c45375a521354fa5704c
statistics/