Resource

Id Histone_ChIP-seq/ENCSR687EBFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR687EBF [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K14ac"]
Description
Labels
  • accession: ENCSR687EBF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
  • biosample_summary: Homo sapiens neuronal stem cell originated from H1
  • date_created: 2015-10-01T07:16:32.936374+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR687EBF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K14ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR687EBF float

Histone_ChIP-seq_ENCSR687EBF
Histone_ChIP-seq ENCSR687EBF [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K14ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR687EBF [1.65, 12.5]
n
23,880,374
mean
4.57
sd
1.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 238803740.74% 76770
chr1 2141782 0.86% 6773
chr1_KI270712v1_random 1318 0.75% 4
chr2 1694957 0.70% 5512
chr3 1041170 0.53% 3420
chr4 911336 0.48% 2906
chr5 999279 0.55% 3308
chr6 887376 0.52% 2990
chr7 1296101 0.81% 4175
chr8 1084401 0.75% 3465
chr9 1270172 0.92% 3964
chr9_KI270718v1_random 241 0.63% 1
chr10 1295020 0.97% 4204
chr11 1433210 1.06% 4479
chr12 898569 0.67% 2942
chr13 477346 0.42% 1590
chr14 827637 0.77% 2596
chr14_GL000225v1_random 1715 0.81% 6
chr15 680579 0.67% 2252
chr16 1188950 1.32% 3796
chr17 1468541 1.76% 4624
chr17_GL000205v2_random 602 0.32% 2
chr18 483106 0.60% 1634
chr19 1302983 2.22% 4233
chr20 891742 1.38% 2823
chr21 402671 0.86% 1267
chr22 1072724 2.11% 3274
chr22_KI270733v1_random 780 0.43% 4
chrUn_GL000195v1 128 0.07% 1
chrUn_GL000219v1 317 0.18% 1
chrUn_KI270442v1 870 0.22% 2
chrX 123288 0.08% 515
chrY 1463 <0.01% 7
3334 contigs with no values (127532297 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76770 125 2354 311.06 271
global segment-length histogram

Files

Filename Size md5
ENCFF160VFA.bed.gz 1.44 MB 944240f21d08b860a70c53504f06cea6
ENCFF160VFA.tabix.bed.gz 736.15 KB 1b81b8b2842456cc00e92809898c26f2
ENCFF160VFA.tabix.bed.gz.tbi 290.45 KB c694c5fd7be08e47e085d01b8d8885da
genomic_resource.yaml 1.49 KB 1f58af03c6d4304f02e09e8cbc37f32d
statistics/