Resource

Id Histone_ChIP-seq/ENCSR684EPXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR684EPX [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR684EPX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue female adult (51 years)
  • date_created: 2018-10-31T03:18:17.177030+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR684EPX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR684EPX float

Histone_ChIP-seq_ENCSR684EPX
Histone_ChIP-seq ENCSR684EPX [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR684EPX [1.93, 66.2]
n
34,953,036
mean
26
sd
14.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 349530361.09% 23703
chr1 3500628 1.41% 2366
chr2 2347473 0.97% 1594
chr3 1828642 0.92% 1230
chr4 1227978 0.65% 799
chr5 1588897 0.88% 1045
chr6 2008757 1.18% 1304
chr7 1683863 1.06% 1191
chr8 1240455 0.85% 846
chr9 1432749 1.04% 1001
chr10 1448876 1.08% 1008
chr11 1910358 1.41% 1218
chr12 1823598 1.37% 1197
chr13 653336 0.57% 462
chr14 1175998 1.10% 795
chr15 1120386 1.10% 771
chr16 1508085 1.67% 1039
chr17 2216218 2.66% 1452
chr18 538060 0.67% 376
chr19 2533978 4.32% 1751
chr20 924023 1.43% 646
chr21 324893 0.70% 233
chr22 897216 1.77% 622
chrX 1018569 0.65% 757
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23703 205 12546 1474.62 1339
global segment-length histogram

Files

Filename Size md5
ENCFF954WOR.bed.gz 594.85 KB 18b75c48ce703db58ff89b93a68cc88e
ENCFF954WOR.tabix.bed.gz 268.07 KB 9534c4f4569216abf91da625f3cb4425
ENCFF954WOR.tabix.bed.gz.tbi 149.2 KB 002e1789322b2ede9c54d526b43d39e6
genomic_resource.yaml 1.73 KB a508fb46a432d1616beda9cb08ff3b64
statistics/