Resource

Id Histone_ChIP-seq/ENCSR683RXFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR683RXF [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR683RXF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)
  • date_created: 2020-07-02T16:43:10.137508+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR683RXF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR683RXF float

Histone_ChIP-seq_ENCSR683RXF
Histone_ChIP-seq ENCSR683RXF [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR683RXF [1.7, 63.1]
n
98,810,635
mean
9.46
sd
6.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 988106353.07% 71278
chr1 9914561 3.98% 6992
chr2 8129373 3.36% 5951
chr3 6378160 3.22% 4707
chr4 3538662 1.86% 2858
chr5 5059164 2.79% 3813
chr6 5970301 3.50% 4485
chr7 4453155 2.79% 3229
chr8 4124510 2.84% 3232
chr9 4505016 3.26% 3225
chr10 5089849 3.80% 3662
chr11 5078244 3.76% 3438
chr12 5289129 3.97% 3671
chr13 2268036 1.98% 1777
chr14 3449105 3.22% 2321
chr15 3391297 3.33% 2451
chr16 3354965 3.71% 2427
chr17 5003673 6.01% 3289
chr18 2093700 2.60% 1621
chr19 3662096 6.25% 2459
chr20 2682399 4.16% 1906
chr21 1487785 3.19% 1083
chr22 2132623 4.20% 1427
chrX 1675071 1.07% 1190
chrY 79761 0.14% 64
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71278 235 26657 1386.27 989
global segment-length histogram

Files

Filename Size md5
ENCFF600DLN.bed.gz 1.67 MB e5db03c6d14b52830bc8520c487fd54b
ENCFF600DLN.tabix.bed.gz 774.18 KB eb4ae1434aba49cddae8e3ae77a79ddb
ENCFF600DLN.tabix.bed.gz.tbi 247.98 KB 2eb91ec62b910c8db6e66fda7ea10913
genomic_resource.yaml 1.87 KB 8e73fb2ee934941d2100c9adb5bfd16d
statistics/