Resource

Id Histone_ChIP-seq/ENCSR678WMQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR678WMQ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR678WMQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-15T20:26:37.237240+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR678WMQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR678WMQ float

Histone_ChIP-seq_ENCSR678WMQ
Histone_ChIP-seq ENCSR678WMQ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR678WMQ [1.5, 39.9]
n
64,489,097
mean
5.45
sd
2.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 644890972.00% 141222
chr1 3307400 1.33% 7679
chr1_KI270706v1_random 16307 9.32% 52
chr1_KI270707v1_random 2655 8.29% 8
chr1_KI270708v1_random 1342 1.05% 4
chr1_KI270709v1_random 19177 28.68% 41
chr1_KI270712v1_random 3594 2.04% 4
chr2 3979510 1.64% 9485
chr2_KI270716v1_random 5692 3.70% 5
chr3 2881539 1.45% 7176
chr3_GL000221v1_random 552 0.36% 2
chr4 3003137 1.58% 7301
chr4_GL000008v2_random 7153 3.41% 10
chr5 3567283 1.97% 8337
chr5_GL000208v1_random 10926 11.79% 21
chr6 2709185 1.59% 6503
chr7 4858337 3.05% 9929
chr8 4354929 3.00% 9287
chr9 1721285 1.24% 4040
chr9_KI270718v1_random 294 0.77% 1
chr9_KI270719v1_random 9408 5.32% 24
chr9_KI270720v1_random 8396 21.50% 16
chr10 3155251 2.36% 6938
chr11 2443997 1.81% 5677
chr12 3878976 2.91% 7811
chr13 2069865 1.81% 4847
chr14 1650822 1.54% 3716
chr14_GL000009v2_random 7546 3.74% 30
chr14_GL000194v1_random 20963 10.95% 41
chr14_GL000225v1_random 124939 59.16% 86
chr14_KI270722v1_random 23224 11.97% 32
chr14_KI270723v1_random 10922 28.66% 21
chr14_KI270724v1_random 10609 26.82% 25
chr14_KI270725v1_random 3565 2.06% 12
chr14_KI270726v1_random 160 0.37% 1
chr15 1674238 1.64% 3455
chr15_KI270727v1_random 629 0.14% 3
chr16 3188265 3.53% 6541
chr16_KI270728v1_random 1391 0.07% 5
chr17 1149066 1.38% 2403
chr17_GL000205v2_random 41013 22.10% 26
chr17_KI270729v1_random 97278 34.64% 111
chr17_KI270730v1_random 25437 22.60% 14
chr18 1801818 2.24% 4076
chr19 5050812 8.62% 9397
chr20 1605716 2.49% 3351
chr21 1282760 2.75% 2617
chr22 1014388 2.00% 2021
chr22_KI270732v1_random 9780 23.54% 17
chr22_KI270733v1_random 9636 5.36% 20
chr22_KI270735v1_random 12281 28.69% 23
chr22_KI270736v1_random 112595 61.89% 111
chr22_KI270737v1_random 1648 1.59% 6
chr22_KI270738v1_random 37135 37.37% 57
chr22_KI270739v1_random 212 0.29% 1
chrUn_GL000213v1 664 0.40% 3
chrUn_GL000214v1 5305 3.85% 14
chrUn_GL000216v2 79753 45.16% 95
chrUn_GL000218v1 19218 11.93% 46
chrUn_GL000219v1 4773 2.66% 10
chrUn_GL000220v1 1119 0.69% 5
chrUn_GL000224v1 17674 9.84% 32
chrUn_KI270302v1 287 12.62% 1
chrUn_KI270320v1 551 12.48% 1
chrUn_KI270322v1 395 1.84% 1
chrUn_KI270330v1 412 24.94% 2
chrUn_KI270417v1 396 19.38% 1
chrUn_KI270429v1 605 44.45% 1
chrUn_KI270435v1 7103 7.64% 20
chrUn_KI270438v1 50207 44.63% 55
chrUn_KI270442v1 162019 41.32% 176
chrUn_KI270448v1 3124 39.09% 5
chrUn_KI270465v1 207 11.67% 1
chrUn_KI270468v1 1133 27.94% 3
chrUn_KI270507v1 1315 24.57% 3
chrUn_KI270508v1 1286 65.91% 2
chrUn_KI270509v1 1471 63.46% 2
chrUn_KI270510v1 353 14.62% 1
chrUn_KI270511v1 1467 18.05% 2
chrUn_KI270512v1 3822 16.85% 5
chrUn_KI270515v1 1560 24.52% 3
chrUn_KI270517v1 208 6.39% 1
chrUn_KI270518v1 377 17.25% 1
chrUn_KI270519v1 22788 16.50% 56
chrUn_KI270521v1 853 11.16% 2
chrUn_KI270522v1 951 16.76% 2
chrUn_KI270538v1 13757 15.07% 24
chrUn_KI270580v1 466 30.01% 1
chrUn_KI270583v1 259 18.50% 1
chrUn_KI270584v1 801 17.75% 2
chrUn_KI270588v1 703 11.42% 2
chrUn_KI270589v1 2922 6.57% 1
chrUn_KI270590v1 1717 36.65% 4
chrUn_KI270591v1 2041 35.21% 4
chrUn_KI270593v1 210 6.91% 1
chrUn_KI270741v1 691 0.44% 3
chrUn_KI270742v1 5935 3.18% 19
chrUn_KI270743v1 5281 2.51% 19
chrUn_KI270744v1 9050 5.37% 22
chrUn_KI270746v1 9997 15.04% 30
chrUn_KI270747v1 736 0.37% 2
chrUn_KI270749v1 6706 4.22% 19
chrUn_KI270750v1 8558 5.75% 20
chrUn_KI270751v1 8999 5.97% 24
chrUn_KI270753v1 826 1.31% 2
chrUn_KI270754v1 3091 7.69% 8
chrUn_KI270755v1 1675 4.56% 4
chrUn_KI270756v1 8110 10.19% 12
chrUn_KI270757v1 9782 13.73% 11
chrX 2282982 1.46% 5601
chrY 727368 1.27% 1417
3256 contigs with no values (119006425 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 141222 140 50857 456.65 340
global segment-length histogram

Files

Filename Size md5
ENCFF234YYO.bed.gz 2.34 MB 3218c960a34e17752f00163b13c3bfd9
ENCFF234YYO.tabix.bed.gz 1.24 MB e7d1767c3df4f4565cb8ee02bb0f4f47
ENCFF234YYO.tabix.bed.gz.tbi 362.0 KB 7af035b7a11f85e328870436b028e232
genomic_resource.yaml 1.96 KB fb3a8ce05b3510952da871555ee32599
statistics/