Resource

Id Histone_ChIP-seq/ENCSR677XPJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR677XPJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR677XPJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:07:18.689402+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR677XPJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR677XPJ float

Histone_ChIP-seq_ENCSR677XPJ
Histone_ChIP-seq ENCSR677XPJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR677XPJ [1.69, 17.1]
n
69,915,154
mean
4.29
sd
1.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 699151542.17% 110648
chr1 5821743 2.34% 8969
chr2 5968082 2.46% 9486
chr3 5030461 2.54% 7988
chr4 4887774 2.57% 8147
chr5 4532101 2.50% 7251
chr6 4912187 2.88% 7772
chr7 3662064 2.30% 5896
chr8 3636838 2.51% 5878
chr9 2707684 1.96% 4258
chr10 3161490 2.36% 4912
chr11 3138278 2.32% 4812
chr12 3653974 2.74% 5691
chr13 2760077 2.41% 4627
chr14 2290921 2.14% 3527
chr15 2008497 1.97% 3009
chr16 1794865 1.99% 2832
chr17 2193366 2.63% 3326
chr18 1880243 2.34% 3089
chr19 1551166 2.65% 2334
chr20 1402930 2.18% 2161
chr21 757820 1.62% 1232
chr22 713684 1.40% 1126
chrX 1448909 0.93% 2325
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110648 188 4806 631.87 539
global segment-length histogram

Files

Filename Size md5
ENCFF623WWO.bed.gz 2.51 MB 38bfd486d93ef621b3c00cc78b5c387b
ENCFF623WWO.tabix.bed.gz 1.14 MB 6c10147f219245eae116454c6e77339f
ENCFF623WWO.tabix.bed.gz.tbi 475.0 KB bb299f29120234d787cba59819dc14bb
genomic_resource.yaml 1.73 KB 91d6d7c78730639e87eb43bdb3af0243
statistics/