Resource

Id Histone_ChIP-seq/ENCSR673OPXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR673OPX [biosample_summary="Homo sapiens GM23248" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR673OPX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005723/
  • biosample_summary: Homo sapiens GM23248
  • date_created: 2014-10-24T16:17:29.466628+00:00
  • date_released: 2017-06-09
  • doi: 10.17989/ENCSR673OPX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Fastq file ENCFF745KKI contains reads of mixed lengths; read lengths followed by respective number of reads: (25, 44232636), (36, 19510253). Fastq file ENCFF391STU contains reads of mixed lengths; read lengths followed by respective number of reads: (25, 45254180), (36, 29964721).
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR673OPX float

Histone_ChIP-seq_ENCSR673OPX

Histone_ChIP-seq ENCSR673OPX [biosample_summary="Homo sapiens GM23248" and target="H3K9me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR673OPX [1.82, 6.59]
n
4,412,401
mean
3.76
sd
0.631

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 44124010.14% 9767
chr1 267858 0.11% 596
chr2 339670 0.14% 789
chr3 266569 0.13% 640
chr4 409139 0.22% 938
chr5 313812 0.17% 712
chr6 227009 0.13% 512
chr7 249263 0.16% 551
chr8 246269 0.17% 558
chr9 165989 0.12% 367
chr10 160742 0.12% 373
chr11 168830 0.12% 380
chr12 201590 0.15% 431
chr13 238519 0.21% 569
chr14 135688 0.13% 314
chr15 99276 0.10% 222
chr16 88285 0.10% 181
chr17 69107 0.08% 150
chr18 115856 0.14% 272
chr19 385356 0.66% 634
chr20 43259 0.07% 98
chr21 169701 0.36% 371
chr22 45383 0.09% 95
chrX 3858 <0.01% 11
chrY 1373 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 9767 190 3958 451.77 396
global segment-length histogram

Files

Filename Size md5
ENCFF982PWR.bed.gz 188.33 KB 33590c5735fc5520fedbcd55fd62752e
ENCFF982PWR.tabix.bed.gz 99.8 KB 85d6eac4f93f5237b670aa518eb84e4c
ENCFF982PWR.tabix.bed.gz.tbi 77.56 KB 6892d62c2ce9f87a80268ef59344bcda
genomic_resource.yaml 2.38 KB 6ce2472e0738ea80c5dbdffe25063499
statistics/