Resource
| Id | Histone_ChIP-seq/ENCSR672HBY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR672HBY [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3F3A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN522PEH|/analyses/ENCAN522PEH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF089LPA|/files/ENCFF089LPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 39108059 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR672HBY | float |
Histone_ChIP-seq_ENCSR672HBY |
Histone_ChIP-seq ENCSR672HBY [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3F3A"]
|
 |
[1.21, 7.15] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44744131 | 1.39% | 79735 |
| chr1 | 4301873 | 1.73% | 7666 |
| chr1_KI270713v1_random | 1900 | 4.66% | 4 |
| chr2 | 3622190 | 1.50% | 6465 |
| chr3 | 3063359 | 1.54% | 5525 |
| chr4 | 1989755 | 1.05% | 3610 |
| chr5 | 2815380 | 1.55% | 5047 |
| chr6 | 2459045 | 1.44% | 4546 |
| chr7 | 2026525 | 1.27% | 3636 |
| chr8 | 2053244 | 1.41% | 3774 |
| chr9 | 2046488 | 1.48% | 3443 |
| chr10 | 2346345 | 1.75% | 4169 |
| chr11 | 2552249 | 1.89% | 4475 |
| chr12 | 2477076 | 1.86% | 4408 |
| chr13 | 1238962 | 1.08% | 2007 |
| chr14 | 1594681 | 1.49% | 2792 |
| chr15 | 1573393 | 1.54% | 2754 |
| chr16 | 1324186 | 1.47% | 2358 |
| chr17 | 2120648 | 2.55% | 3816 |
| chr18 | 1005156 | 1.25% | 1858 |
| chr19 | 1185109 | 2.02% | 2115 |
| chr20 | 1104509 | 1.71% | 1999 |
| chr21 | 628251 | 1.35% | 1101 |
| chr22 | 841214 | 1.66% | 1423 |
| chr22_KI270733v1_random | 209 | 0.12% | 1 |
| chrUn_KI270466v1 | 279 | 22.63% | 1 |
| chrUn_KI270467v1 | 696 | 17.76% | 1 |
| chrUn_KI270749v1 | 350 | 0.22% | 1 |
| chrX | 371059 | 0.24% | 740 |
| 3338 contigs with no values (185920071 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 79735 | 165 | 10994 | 561.16 | 473 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF158KSY.bed.gz | 1.69 MB | 5ec35602cbb4337891ed767ce64c4d51 |
| ENCFF158KSY.tabix.bed.gz | 823.26 KB | 0f1157d01d307cadbea23bd7c705a1ce |
| ENCFF158KSY.tabix.bed.gz.tbi | 257.53 KB | 9072a19311ec0db081b881359ddeba7e |
| genomic_resource.yaml | 1.98 KB | b6b8bf0cf8106590f7adc4295b7c025e |
| statistics/ |