Resource
| Id | Histone_ChIP-seq/ENCSR671BOA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR671BOA [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (34 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN064PTO|/analyses/ENCAN064PTO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF843IVM|/files/ENCFF843IVM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16304043 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR671BOA | float |
Histone_ChIP-seq_ENCSR671BOA |
Histone_ChIP-seq ENCSR671BOA [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (34 years)" and target="H3K4me1"]
|
 |
[1.65, 15.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30893461 | 0.96% | 94528 |
| chr1 | 3225813 | 1.30% | 9538 |
| chr2 | 2622688 | 1.08% | 8119 |
| chr3 | 2284950 | 1.15% | 7239 |
| chr4 | 1048635 | 0.55% | 3711 |
| chr5 | 1729532 | 0.95% | 5479 |
| chr6 | 1612827 | 0.94% | 5365 |
| chr7 | 1310380 | 0.82% | 4321 |
| chr8 | 1258762 | 0.87% | 4124 |
| chr9 | 1400951 | 1.01% | 4169 |
| chr10 | 1888881 | 1.41% | 5401 |
| chr11 | 1815194 | 1.34% | 5222 |
| chr12 | 1457610 | 1.09% | 4521 |
| chr13 | 730934 | 0.64% | 2446 |
| chr14 | 1024484 | 0.96% | 3116 |
| chr15 | 1258500 | 1.23% | 3683 |
| chr16 | 953666 | 1.06% | 2739 |
| chr17 | 1394187 | 1.67% | 3799 |
| chr18 | 615356 | 0.77% | 2010 |
| chr19 | 815791 | 1.39% | 2093 |
| chr20 | 874283 | 1.36% | 2564 |
| chr21 | 289010 | 0.62% | 973 |
| chr22 | 806642 | 1.59% | 2102 |
| chrX | 462447 | 0.30% | 1737 |
| chrY | 11938 | 0.02% | 57 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94528 | 130 | 4078 | 326.82 | 270 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF672WQV.bed.gz | 1.84 MB | 61edabf3e9e0cf11abaa39cd27dd7632 |
| ENCFF672WQV.tabix.bed.gz | 915.89 KB | 7c60b165a21a72d1c28a641e6c549940 |
| ENCFF672WQV.tabix.bed.gz.tbi | 310.62 KB | fa793fb4f50d66e052438cd50d55cce4 |
| genomic_resource.yaml | 2.01 KB | 20f6f3024c8c79fd25f0d8fbb338d4e9 |
| statistics/ |