Resource
| Id | Histone_ChIP-seq/ENCSR666FYM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR666FYM [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN135CMP|/analyses/ENCAN135CMP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN135CMP|/analyses/ENCAN135CMP/} has in progress subobject document {f3436f24-01b9-4790-8f52-72d7eeb718dc|/documents/f3436f24-01b9-4790-8f52-72d7eeb718dc/} audit_not_compliant: Processed alignments file {ENCFF402RBO|/files/ENCFF402RBO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25170192 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR666FYM | float |
Histone_ChIP-seq_ENCSR666FYM |
Histone_ChIP-seq ENCSR666FYM [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K27me3"]
|
 |
[1.76, 7.86] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3850793 | 0.12% | 8143 |
| chr1 | 276431 | 0.11% | 602 |
| chr2 | 272560 | 0.11% | 552 |
| chr3 | 169524 | 0.09% | 372 |
| chr4 | 224602 | 0.12% | 474 |
| chr5 | 258514 | 0.14% | 536 |
| chr6 | 241348 | 0.14% | 516 |
| chr7 | 211202 | 0.13% | 458 |
| chr8 | 196374 | 0.14% | 411 |
| chr9 | 171385 | 0.12% | 360 |
| chr10 | 214876 | 0.16% | 435 |
| chr11 | 155594 | 0.12% | 334 |
| chr12 | 175467 | 0.13% | 363 |
| chr13 | 149423 | 0.13% | 302 |
| chr14 | 145439 | 0.14% | 312 |
| chr15 | 131365 | 0.13% | 288 |
| chr16 | 147207 | 0.16% | 315 |
| chr17 | 162510 | 0.20% | 341 |
| chr18 | 82285 | 0.10% | 176 |
| chr19 | 155253 | 0.26% | 334 |
| chr20 | 181825 | 0.28% | 381 |
| chr21 | 51080 | 0.11% | 119 |
| chr22 | 66954 | 0.13% | 145 |
| chrX | 9575 | 0.01% | 17 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 8143 | 205 | 2887 | 472.9 | 399 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF873VXC.bed.gz | 155.15 KB | fadbd8eefa116cfb383740d8b7f51f6d |
| ENCFF873VXC.tabix.bed.gz | 82.37 KB | deb2af55f379280b1eb30cb7f1d32340 |
| ENCFF873VXC.tabix.bed.gz.tbi | 60.12 KB | 6dd4319bda79d6d2a46b13b11ce4c5bb |
| genomic_resource.yaml | 2.42 KB | e7048b42a689d4d29e190a542e73aa04 |
| statistics/ |